BAC Information

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BAC

Clone NameMSMg01-460L22
Chromosome9 (Build37)
Map Location 77,614,978 - 77,615,487
singlet/doubletsinglet
Overlap geneGclc
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31
Downstream geneLOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-460L22.T7 (MSMg01no460_l22.b1)MSMg01-460L22.TJ (MSMg01no460_l22.g1)
ACCAG546029AG546030
length756727
length of high quality
(start - end)
379 (68 - 446)509 (70 - 578)
definitionCHROMAT_FILE: MSMg01no460_l22.b1 PHD_FILE: MSMg01no460_l22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:05 2005CHROMAT_FILE: MSMg01no460_l22.g1 PHD_FILE: MSMg01no460_l22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:34:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGATCCGCGGAATTCT
TTANAGTCCCTGTTTCCAAGCCAGAACGCTCAAGGGGGTGGGAAAGTTCA
AGACTCTTGATGACGAGGTCACTTATGGGTTGATGATGCAGTTTGTAAAC
TGCCTTAGGGTCAATTGCGGTGATGAAACGCCATGACCAGTAACTTGGGG
AGGGAAGGGTTTATTCCACTCATAGTTCCATACAACAATTCACCGTTAGA
AGCAAAGGCAGGAGCCTGGAAGGCAGAGCTGATGCAGAGGCCATGGGGGA
TTGCTGCTTATTTTCTTGCTTCATAGTGCTTGCTCAGCCTGCTTTCTTAC
AGCCTACGGGAGGCTCAACCCTGATGGGCTTTGTCTGCCCTCCCACATCA
ATCTTTAACTAACAAGATGCCCTACAGGCCTACAGCCTGATCTTATGGAG
GCATTTTCTTAATAGAGGTTCCTTCCTCTCCCATGAATCTAGCTTTTCCT
CCAGTTGATTTATACTATTCTGTACTTTTCCCCAACCTCCCCCACCTGGG
TTTTATTAAAACCATGCCCTAATTTTTTTTTAAATCTTTGCAATATGTTT
TCCCCCTTATTGCTTACGTTTTCCCTCTCTTCCTCCCTCTCTTTTTTCTT
ATTTATACCCTCCCTTTCTTTCCCGTTTTTCTATATTCTCCTTGTCTCTT
TTCACCTATTATTCTCCGTGTTTTTTTATTTTTGATCTGTTTTCCTCATC
TCTTTT
CTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATTTGCCCTTAAAATCTAGGTGCTGAAGTCC
TGAAGCGCAGTTGTTTTGAGGTAAATAACTACTTATATTTATAATACTGT
GAGTCATTACTGGCCAAACCCCCGTCACATCAGTAACCTGATGCGCTTCC
TTCTTAGGCTTGAGTGAGACGACGAGCTCAGTTCATAAACAGGGCGGCCT
TCATACATGTCAGACGGTTCAAGATGGCATGCTGAAGGTGATTGCATGAT
TAAAAAAAATAACTGACATAAATTCAGAGGCCCAGAAAATAGATGTTTTA
TGTCATCCTTACAGCGTGAAGAAGCAGGGCAGCTTAGTGGATACAGGTGG
CTTCCCCACACCCCCAGCAGCCTGGATAGGACTGCTGGGGCCTGTGTGAT
GATGGGATGATAGCCAGCTCCCACTAGTTATCACCCCATCTCCATACACA
GGCACCACGACCGCCCCAAAGCCTAAATTATAGAGAAATGTGGAGAAAAC
TGTAATTATGAGGGAGGAAATCTACATTTGTGGCTTCTTTTGTGGCACTG
TCAGTGTCTGGGTCAAAAATCTGGTCTTTCTTAGGCTTTGGCATTTGGAC
AGGAATAAAAAGGGTCTTATATTAAATACTCTCTTATTATTTGATATTCC
GACTACTGATACTTTTTTTTTACTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no460_l22.g1 MSMg01no460_l22.g1 CHROMAT_FILE:
MSMg01no460_l22.g1 PHD_FILE: MSMg01no460_l22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:34:05 2005
         (509 letters)



>mm_chr9_77614778_77615687
          Length = 910

 Score =  955 bits (494), Expect = 0.0
 Identities = 506/510 (99%), Gaps = 1/510 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgcccttaaaatctaggtgctgaagtcctgaagcgcagttgttttgaggtaaataac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgcccttaaaatctaggtgctgaagtcctgaagcgcagttgttttgaggtaaataac 260

                                                                       
Query: 61  tacttatatttataatactgtgagtcattactggccaaacccccgtcacatcagtaacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacttatatttataatactgtgagtcattactggccaaacccccgtcacatcagtaacct 320

                                                                       
Query: 121 gatgcgcttccttcttaggcttgagtgagacgacgagctcagttcataaacagggcggcc 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 321 gatgcgcttccttcttaggcttgagtgagactacgagctcagttcataaacagggtggcc 380

                                                                       
Query: 181 ttcatacatgtcagacggttcaagatggcatgctgaaggtgattgcatgattaaaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcatacatgtcagacggttcaagatggcatgctgaaggtgattgcatgattaaaaaaaa 440

                                                                       
Query: 241 -taactgacataaattcagaggcccagaaaatagatgttttatgtcatccttacagcgtg 299
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ataactgacataaattcagaggcccagaaaatagatgttttatgtcatccttacagcgtg 500

                                                                       
Query: 300 aagaagcagggcagcttagtggatacaggtggcttccccacacccccagcagcctggata 359
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 aagaagcagggcagcttagtggatacaggtggcttcccaacacccccagcagcctggata 560

                                                                       
Query: 360 ggactgctggggcctgtgtgatgatgggatgatagccagctcccactagttatcacccca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggactgctggggcctgtgtgatgatgggatgatagccagctcccactagttatcacccca 620

                                                                       
Query: 420 tctccatacacaggcaccacgaccgccccaaagcctaaattatagagaaatgtggagaaa 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctccatacacaggcaccacgaccgccccaaagcctaaattatagagaaatgtggagaaa 680

                                         
Query: 480 actgtaattatgagggaggaaatctacatt 509
           ||||||||||||||||||||||||||||||
Sbjct: 681 actgtaattatgagggaggaaatctacatt 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 910
Length adjustment: 10
Effective length of query: 499
Effective length of database: 900
Effective search space:   449100
Effective search space used:   449100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)