Query= MSMg01no461_j21.b1 MSMg01no461_j21.b1 CHROMAT_FILE:
MSMg01no461_j21.b1 PHD_FILE: MSMg01no461_j21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:17 2005
(274 letters)
>mm_chr9_52458611_52459281
Length = 671
Score = 468 bits (242), Expect = e-136
Identities = 264/272 (97%), Gaps = 3/272 (1%)
Strand = Plus / Minus
Query: 3 gaattcagcatttttacctgtggggaaaaaaaaaaccaaatctgcaatgttgacaaaaaa 62
|||||||||||||||| ||||||| ||||||| ||||||||||||||||||| ||||
Sbjct: 471 gaattcagcatttttatttgtgggg-gaaaaaaacccaaatctgcaatgttgac--aaaa 415
Query: 63 aagttggagtttgatgccatcagttattcatttctcaaagatgacaggtctcagcatgga 122
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 414 aagttggagtttgatgccatcagttattcatctctcaaagatgacaggtctcagcatgga 355
Query: 123 actccacacaccactgcccagaactcccctggcatctgttccctgctaccagtgtgcgta 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 actccacacaccactgcccagaactcccctggcatctgttccctgctaccagtgtgcgta 295
Query: 183 gctgctgtgcaaagagcagagcaccagtaaaaacccacatagctctagctagcttatatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 gctgctgtgcaaagagcagagcaccagtaaaaacccacatagctctagctagcttatatc 235
Query: 243 tgcgcaagctaccccgtcactggaaacatgct 274
||||||||||||||||||||||||||||||||
Sbjct: 234 tgcgcaagctaccccgtcactggaaacatgct 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 671
Length adjustment: 9
Effective length of query: 265
Effective length of database: 662
Effective search space: 175430
Effective search space used: 175430
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no461_j21.g1 MSMg01no461_j21.g1 CHROMAT_FILE:
MSMg01no461_j21.g1 PHD_FILE: MSMg01no461_j21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:17 2005
(344 letters)
>mm_chr9_52303325_52304068
Length = 744
Score = 586 bits (303), Expect = e-172
Identities = 333/345 (96%), Gaps = 4/345 (1%)
Strand = Plus / Plus
Query: 4 ggcttgtcatgttttaataagagctcatcgggtccagctttgttagaaagtcaggctgtt 63
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 204 ggcttgtcatgttttaataagagctcatcgggtccagctttgttggaaagtcaggctgtt 263
Query: 64 gaatgttcctgggagcttggtggtgctgagggaggaacctgctagctcagcaggtagctc 123
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 264 gaatgttcctgggagcttggtggtgttgagggaggaacctgctagcccagcaggtagctc 323
Query: 124 aggtgatgtgcaaagatgggcgaacacagctcctccttctcaggggcatcagagagaaag 183
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aggtgatgtgcaaagatgggcgaacacagctcctccttctcaggggcatcagagagaaaa 383
Query: 184 cagtggagaaaggctgaggtagtagattgacagctctgagtcctcagctggtaatttaga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtggagaaaggctgaggtagtagattgacagctctgagtcctcagctggtaatttaga 443
Query: 244 gtattatagagggggcgctaaagagcaagagagcatgagagctggagagagcgagagcaa 303
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gtaagagagagggggcgctaaagagcaagagagcatgagagctggagagagcgagagcaa 503
Query: 304 gagggagagagaaagaa----gtatttcttggcatctaaatatca 344
||||||||||||||||| |||||| |||||||||||||||||
Sbjct: 504 gagggagagagaaagaacgaagtattttttggcatctaaatatca 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
