Query= MSMg01no461_k15.b1 MSMg01no461_k15.b1 CHROMAT_FILE:
MSMg01no461_k15.b1 PHD_FILE: MSMg01no461_k15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:21 2005
(159 letters)
>mm_chr9_42401250_42401808
Length = 559
Score = 308 bits (159), Expect = 1e-88
Identities = 159/159 (100%)
Strand = Plus / Minus
Query: 1 ttataaccaagactcagcagcagcacacagctgtgctcttttctgagtgggaatgggcat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 ttataaccaagactcagcagcagcacacagctgtgctcttttctgagtgggaatgggcat 300
Query: 61 attgtccttcttctgtcttctgcccctggactttcaaaccccttcattcctcagtgtcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 attgtccttcttctgtcttctgcccctggactttcaaaccccttcattcctcagtgtcag 240
Query: 121 cctcatcctttctaatattagttcccttgaaggtgtggt 159
|||||||||||||||||||||||||||||||||||||||
Sbjct: 239 cctcatcctttctaatattagttcccttgaaggtgtggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 159
Length of database: 559
Length adjustment: 8
Effective length of query: 151
Effective length of database: 551
Effective search space: 83201
Effective search space used: 83201
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no461_k15.g1 MSMg01no461_k15.g1 CHROMAT_FILE:
MSMg01no461_k15.g1 PHD_FILE: MSMg01no461_k15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:35:21 2005
(479 letters)
>mm_chr9_42229621_42230498
Length = 878
Score = 866 bits (448), Expect = 0.0
Identities = 475/496 (95%), Gaps = 21/496 (4%)
Strand = Plus / Plus
Query: 1 acaactatcagacagcagttaatttttttttcatctgcatacacttaccatgacaatcag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 acaactatcagacagcagttaatttttttttcatctgcatacacttaccatgacaatcag 246
Query: 61 aactttattcaaaatggctttgtaagttcatcttgtactgcctacctctccaaactcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aactttattcaaaatggctttgtaagttcatcttgtactgcctacctctccaaactcaat 306
Query: 121 gaagcaatgagttagacaaggttaaagtcaaaggcatacaatgcaggctagaaatatgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gaagcaatgagttagacaaggttaaagtcaaaggcatacaatgcaggctagaaatatgtg 366
Query: 181 tctgtgtgtgtctct--------------gtgtgtgtgtgtgtgtgtgtgtgtaacaaat 226
||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 367 tctgtgtgtgtctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaacaaat 426
Query: 227 gaaatggcatctgactttta---aaaaaaaagcaaaaaactgccgttgccattcactggt 283
||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaaatggcatctgac----aggaaaaaaaaagcaaaaaactgccgttgccattcactggt 482
Query: 284 aagtctgacaaaacttggatttaagaagtactgaggctgagtgtgctgtgatccacatgc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 aagtctgacaaaacttggatttaagaagtactgaggctgagtgtgctgtgatccacatgc 542
Query: 344 acaggaggtggcggtgggctggagacaccaattccctgtcagtactgacaaaccaaacga 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 acaggaggtggcggtgggctggagacaccaattccctgtcagtactgacaaaccaaacga 602
Query: 404 agaaaaagccattagtactgtcaattagtactaatggcttgacctagctggtatcacaaa 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agaaaaagccattagtactgtcaattagtactaatggcttgacctagctggtatcacaaa 662
Query: 464 tggcattcaataacta 479
||||||||||||||||
Sbjct: 663 tggcattcaataacta 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 878
Length adjustment: 10
Effective length of query: 469
Effective length of database: 868
Effective search space: 407092
Effective search space used: 407092
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
