BAC Information

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BAC

Clone NameMSMg01-462D06
Chromosome9 (Build37)
Map Location 19,728,860 - 19,729,106
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77
Downstream geneEG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462D06.T7 (MSMg01no462_d06.b1)MSMg01-462D06.TJ (MSMg01no462_d06.g1)
ACCAG547146AG547147
length763763
length of high quality
(start - end)
512 (70 - 581)247 (76 - 322)
definitionCHROMAT_FILE: MSMg01no462_d06.b1 PHD_FILE: MSMg01no462_d06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:08 2005CHROMAT_FILE: MSMg01no462_d06.g1 PHD_FILE: MSMg01no462_d06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTCAAATCAGCGGAA
TTCTCACCTGGAGTATCTCGAATGGCAGAGAAGCACCTGAAAAAATGTTC
AACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACGCTGAGATTCC
ACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGA
TGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGA
TTGCAGGCTTGTACAACCATTCTGGAAATCAGTCTGGCGGTTCCTCAGAA
AATTGGACATAGTACTACCGGTGTATCCAGCAATACCTCTCCTGAGCATA
TATCCAGAAGATGCCCCAACTGGTAAGAAGGACTCATGCTCCACTATGTT
CATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCC
CCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAG
TACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCCAATG
GATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGGA
ACTCACACAATATGTACTCACTGATAAGTGGATATTATGCCAAAACCTAT
GATACCCTCGATATAAGATACTATTTCTCTAATCTCTTGACACTCTCTTA
AAATGAAGACCGAAATGTGGTAACCTATGTCCCCCCCTATAAAGGGGAAC
AACACACCTTTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTTCCGAATTCTTCTCTACTCTGCAGCATATTATCA
AAGTGTAATGCTGGTGAAGAATCTTAACAAAGTCCAGTAAATTTGAGATT
GCAGCTTTGTGAAATAACTACACTTATATTTATTCTTTGTGTTAACTCAC
AGTATGTATATGAGCTTTGGTGCTTTAAGCCAAAATTATTGAAAACTCTT
TTCAATGATGTGATAGTATAAAATACAAAAAGTGACCAAAGTCGCTTGTC
TTTGAGAACCATCGACTTCAGGAANAATTTTTAGGAGTTCTGTGAGCAGG
GAACAGAATGGGTGGTTGTATGCAATTCATTGTGGCAGGTAAGTATTAGC
GAATGAGAATAGTGGGAGAAGTGATATATATGACATTGATGAGATGGTTG
AAACAAATATTTCAGAAGGCACAAAAGATATATATCTGTACCAGAGGAAC
CAGAGTCAGAACAGACATAAAAGTGTAGATAATATCATGCTGAGTGAGGT
AATCCAGTCTACAAAATACTACATAGGATATTCATTGACTTGTAAGTGAT
TATTAATCCTTCAGTTCAGAATTCCCCTTGTAAAATGCTCCGACTATACG
AAGCTCTTTATCTATTTATTACTACATTGCACTATACTTTCTGCTTCCTT
TAATGGCAATAAAAATATTCTTAATAGCATATACCCTTACTTTTTGTTTT
ACCCTTTTTTGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_d06.g1 MSMg01no462_d06.g1 CHROMAT_FILE:
MSMg01no462_d06.g1 PHD_FILE: MSMg01no462_d06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:08 2005
         (247 letters)



>mm_chr9_19728660_19729306
          Length = 647

 Score =  447 bits (231), Expect = e-130
 Identities = 243/247 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctctactctgcagcatattatcaaagtgtaatgctggtgaagaatcttaacaaagtcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttctctactctgcagcatattatcaaagtgtaatgctggtgaagaatcttaagaaagtcc 260

                                                                       
Query: 61  agtaaatttgagattgcagctttgtgaaataactacacttatatttattctttgtgttaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtaaatttgagattgcagctttgtgaaataactacacttatatttattctttgtgttaa 320

                                                                       
Query: 121 ctcacagtatgtatatgagctttggtgctttaagccaaaattattgaaaactcttttcaa 180
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 ctcacagtatgtatatgaactttggtgctttaagtcaaaattattgaaaactcttttcaa 380

                                                                       
Query: 181 tgatgtgatagtataaaatacaaaaagtgaccaaagtcgcttgtctttgagaaccatcga 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaggtgatagtataaaatacaaaaagtgaccaaagtcgcttgtctttgagaaccatcga 440

                  
Query: 241 cttcagg 247
           |||||||
Sbjct: 441 cttcagg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)