Query= MSMg01no462_g21.b1 MSMg01no462_g21.b1 CHROMAT_FILE:
MSMg01no462_g21.b1 PHD_FILE: MSMg01no462_g21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:26 2005
(457 letters)
>mm_chr9_120593919_120594775
Length = 857
Score = 482 bits (249), Expect = e-140
Identities = 293/315 (93%), Gaps = 14/315 (4%)
Strand = Plus / Plus
Query: 149 cacacacacacactcacggactcacacacacacatgcacataca----------cacaca 198
||||||||||||||||||||||||||||| |||| |||||||| ||||||
Sbjct: 339 cacacacacacactcacggactcacacacgcaca--cacatacactcacggactcacaca 396
Query: 199 cacaca--cacacacacacacacacacacacacacacacacagtctgaaggcagaggact 256
|||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 397 cacacatgcacacacacacatacacacacacacacacacatagtctgaaggcagaggact 456
Query: 257 taagaccccagtagaggccacagtgcagagatcagaaatctgagagctgaacatgagaat 316
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 457 taagaccccagtagaggccacagtgcagagatcagaaatctaagagccgaacatgagaat 516
Query: 317 aagcacctcggataaatagcatctttctgctcttggtacaatattgaaatagatgaagca 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aagcacctcggataaatagcatctttctgctcttggtacaatattgaaatagatgaagca 576
Query: 377 tcttcgtgcttagggctgtaccttgcagggtctctattacagctccttggtccacagaca 436
|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct: 577 tctttgtgcttagggctgtaccttgctgggtctctattacagctccttggtccacagtca 636
Query: 437 ccattgatgccttct 451
|||||||||||||||
Sbjct: 637 ccattgatgccttct 651
Score = 197 bits (102), Expect = 1e-54
Identities = 146/164 (89%), Gaps = 12/164 (7%)
Strand = Plus / Plus
Query: 81 aagagagaggatggagagcagtagagaccagcaccctaggtccttttctggcctccacag 140
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 1 aagagagaggatggagagcagtagagaccagcaccctaggtccttttctggtctccaaag 60
Query: 141 gttcccatcacacacacacactcacggactcacacacacaca-tgcac--a-t-acacac 195
||||||||||||||||||||| |||| |||||||||||| | ||| | | ||||||
Sbjct: 61 gttcccatcacacacacacacacacg----cacacacacacact-cacggactcacacac 115
Query: 196 acacacacacacacacacacacacacacac--acacacacacac 237
|||||||||||||| ||||||||||| ||| || |||||||||
Sbjct: 116 acacacacacacacgcacacacacactcacggactcacacacac 159
Score = 97.4 bits (50), Expect = 2e-24
Identities = 79/92 (85%), Gaps = 8/92 (8%)
Strand = Plus / Plus
Query: 151 cacacacacactcacggactcacacacacacatgcacatacacacacacac--acacaca 208
||||||||||||||||||||||||||||| ||||| |||||||| ||| || ||||
Sbjct: 131 cacacacacactcacggactcacacacac----gcacacacacacactcacggactcaca 186
Query: 209 cacacacacacacacacacac--acacacaca 238
||||||||| ||||||||||| || ||||||
Sbjct: 187 cacacacacgcacacacacacggactcacaca 218
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 157
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 3
Length of query: 457
Length of database: 857
Length adjustment: 10
Effective length of query: 447
Effective length of database: 847
Effective search space: 378609
Effective search space used: 378609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no462_g21.g1 MSMg01no462_g21.g1 CHROMAT_FILE:
MSMg01no462_g21.g1 PHD_FILE: MSMg01no462_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:26 2005
(287 letters)
>mm_chr9_120796781_120797467
Length = 687
Score = 406 bits (210), Expect = e-118
Identities = 282/336 (83%), Gaps = 49/336 (14%)
Strand = Plus / Minus
Query: 1 catggtcactttaactcacaaaatgacagtggtagcaaaagtaatccgacgggtgagtgg 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 345 catggtcactttaactcacaaaatgacagtggtagcaaaagtaatcccacgggtgaatgg 286
Query: 61 ttctccaggtggttggccccattggtgtggctcatgtgcaacaaactgatcctgacccag 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 285 ttctccaggtggttggccccattggtgtggctcatgtgcaacaaactcatcctgacccag 226
Query: 121 cattctcctccagggtcctgcccta----------------------------------- 145
|||||||||||||||||||||||||
Sbjct: 225 cattctcctccagggtcctgccctagacacaatcagtaggaatgtctctgccctggggct 166
Query: 146 ---atgccttccctcagctcagtgcctggatgttagaagagaatggtgtcctcatctact 202
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 165 atcatgccttccctcagctcagtgccaggatgttagaagagaatggtgtcctcatctact 106
Query: 203 gaaagggagaactggagaccaaggaacaaggggtgagggagaga-----t-tgtgtgtgt 256
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 105 gaaagggagaactggagaccaaggaacaaggggtgagggagagactgtgtgtgtgtgtgt 46
Query: 257 gcagtgtgt-----gtgtgtgtgtgtgtgtgtgtgt 287
| ||||||| ||||||||||||||||||||||
Sbjct: 45 gtagtgtgtgaggagtgtgtgtgtgtgtgtgtgtgt 10
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
