NNTTTTTTCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAG
AATCCGCGGAATTCAAGTGTCATTCCCCATAAAAAAAAAGGTATTGGAAC
TCAGCCATGTTCATTCATGAACTTTCTGCTGCTCTTGTGCTTTATTGGCA
GAGTTGAACATTTGAGACAGACACCATATGGCCCACAGAAAAATAAAATA
TTTGTCATCTAGCCTTTGACAAAAATGTTGAATTCCTAATGTTAGTAATG
GAGGCCAAATCAGGCAATGGAACAAGATAGAAAACAGAAGGACCCCAGAT
ACTCCAACAGTTCATAGGATAGAGTTACTATTCAATCCTTGATTGACGCC
ATGGGATTTACATGTAAAAGTAAAGAAGACCCCATTCTATAATGTCATAG
GCCTTCAGGTTTTCCTTTCTTCATCCTATCTGCCATGTGTCTCTCAAGTC
CATACCATAGAAGGGCAACATTTCCTCCATCTTTCACCTCTGCCATAGAC
TCCTANNATAATAGCAGGATATATGCAATCCAAAGCTTGGAACATGACAT
GTCCGTATTATTTCTACATTTAGAGGCCTGAGAAGAAATAAATAAAACTT
ATTCATCCCCAGAAGGGGAGGGACCGGAAAAAACAAAAGAGACTTGAGGT
CCACTCCCTTTTCAAGCTACGGTGGAAAAGGAACCCCCCCGCAACCACCC
GAAATTCTTTTTATTTTCTTCCCCCCCCCCCCGGGAAAAAAGGTTTGGTC
AGAAATAAACCTTCCTTTGGGA

AATTTCTCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTT
ATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGA
GATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACAT
TGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCT
ACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGC
GAGAATTTTATTGAGGATTTTTGCATCGTATATTCATAAGAGAAATTGGT
CTGAAGTTCTCTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGT
AATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTT
TGTGAAATAGTTTGTGCAGAACTGGAATTAGATCTTCTTTTGAGGTCTGA
TAAAACTCTGCTCCTAACCCCATCTGGCCCTGGGCTTTTTTTTATCGGTA
TAATATTAATAAACGGTTTCATTTTTTAAAGTGTAATTGAAATGGCTTCC
CTTACCCACTTCTTTTTGCATTCTTTCTTCCATCCTGTTTTCTTAACTAA
ATTTTTCTCTTTTTCTTTCTTTTTTTCCCCCCCTTTCCAAACTATATCAT
TCCTTCACATATCCTCTTCTCTTCTTTTTCTATATCTATCTTCTCCTTCC
TCACCCACTCACACCAATATCTATA

Query= MSMg01no462_j23.b1 MSMg01no462_j23.b1 CHROMAT_FILE:
MSMg01no462_j23.b1 PHD_FILE: MSMg01no462_j23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:41 2005
         (440 letters)



>mm_chr9_84287632_84288471
          Length = 840

 Score =  799 bits (413), Expect = 0.0
 Identities = 431/439 (98%), Gaps = 6/439 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcaagtgtca-ttccccat----aaaaaaaaaggtattggaactcagccatgttca 58
           |||||||||||||| || | |||    |||||||||||||||||||||||||||||||||
Sbjct: 808 gaattcaagtgtcagtt-ctcataagaaaaaaaaaaggtattggaactcagccatgttca 750

                                                                       
Query: 59  ttcatgaactttctgctgctcttgtgctttattggcagagttgaacatttgagacagaca 118
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 ttcatgaactttctgctactcttgtgctttattggcagagttgaacatttgagacagaca 690

                                                                       
Query: 119 ccatatggcccacagaaaaataaaatatttgtcatctagcctttgacaaaaatgttgaat 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ccatatggcccacagaaaaataaaatatttgtcatctagcctttgacaaaaatgttgaat 630

                                                                       
Query: 179 tcctaatgttagtaatggaggccaaatcaggcaatggaacaagatagaaaacagaaggac 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tcctaatgttagtaatggaggccaaatcaggcaatggaacaagatagaaaacagaaggac 570

                                                                       
Query: 239 cccagatactccaacagttcataggatagagttactattcaatccttgattgacgccatg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 cccagatactccaacagttcataggatagagttactattcaatccttgattgacgccatg 510

                                                                       
Query: 299 ggatttacatgtaaaagtaaagaagaccccattctataatgtcataggccttcaggtttt 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ggatttacatgtaaaagtaaagaagaccccattctataatgtcataggccttcaggtttt 450

                                                                       
Query: 359 cctttcttcatcctatctgccatgtgtctctcaagtccataccatagaagggcaacattt 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cctttcttcatcctatctgccatgtgtctctcaagtccataccatagaagggcaacattt 390

                              
Query: 419 cctccatctttcacctctg 437
           |||||||||||||||||||
Sbjct: 389 cctccatctttcacctctg 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)