BAC Information

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BAC

Clone NameMSMg01-462M12
Chromosome9 (Build37)
Map Location 31,157,756 - 31,158,216
singlet/doubletsinglet
Overlap genePrdm10
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539
Downstream geneNfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-462M12.T7 (MSMg01no462_m12.b1)MSMg01-462M12.TJ (MSMg01no462_m12.g1)
ACCAG547588AG547589
length760771
length of high quality
(start - end)
243 (81 - 323)474 (77 - 550)
definitionCHROMAT_FILE: MSMg01no462_m12.b1 PHD_FILE: MSMg01no462_m12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:54 2005CHROMAT_FILE: MSMg01no462_m12.g1 PHD_FILE: MSMg01no462_m12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:36:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATAATTTGCGGCCGCGTAAACGAANCACTAAATTACAAAACTAGGGC
GGAANNCNCAGCAGATTGCAACATACATAGCTGGGAAGCACTTAAAGAAC
CAGGAGAATGAATCTAAATATGCAGCCGTAGGGGCTAGGAGGGAAGAGGA
ACCTCTAGAAAGTCTCAGAAACCTAGGATGTGAGAGGCTATCAGGACTTA
ATGGAGATGACATTAGGCAAAGTGCCCAACAGTGGGGAGATGGAACTGGA
ATTATTTTCCTCCAGTAGATAGACACAGCCCTCAGTTGAGGCAGGGGCCA
CCCACTCATCTTCAAATTTTACTACTTGTAATTGNTCCTTTTTAAAGGAA
ATGCAGAATCTTTTATGGAGCAGAAACTGATTGAAAGGCCACCCAGTGAC
CGGCCCAGCTTGGGATCCATCCCATGAGCACTCATCAAATCCTGATACTA
TTACTGAGGCCATATTCTACACACAGACAGGAGCCTAGCATGGCTGTCCT
CTAAGAGGCTCTACCAGCAGCTGACTGAGACAAATGCAGATACTGCCTCC
CATTGGATTGAAGTTGGGAACCTATATGGAAGAGTCTGCGTAAGGACTGA
AGGAGCTGAAGGTTATTGATTTGTCTCTCCTAGAATGATCATCTGTGTTT
TTTTTTTTCTGACCCCTCAGAGCTCCTAGAGACCAATCTTCTACCCCTGT
TTATTCCTGTATGGGTTGGTGGTCCCAGCTACCTGTGCAAATGATGAATG
CCTTGTTGTG
NCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACTACAAGCTATGTATGGTGGCA
TCTACCTGGAATCTCAGTACTCAGGAGGCTGACACAGGAGGATTGCCATG
AGTTTGAGGCCAGCTTAGGCTATGTAGCAAGTTAAGGGCCAGCCTGGGAA
TAGAGTGAGACCTTGTCTCAAAAACCAACATGAGCGGATGACACAGATGT
CACTGTGGGCGGGGCTGCTTGCCACTTCGCTTAACAACCTGTGTTTGATC
CCTGGAACTGGCTCCACGGTTTTATTCTCTGTCTGTATGCAAACTATGTC
ATGTGCACATGCATGCTTGTACACACACACAAGTTTTAAAGAACTCCAAT
GTGAACAGTATAAATTGGACTGCAGTTTTCCTATCTTTTCTCTTTCCTTC
CTTCTTTCCATCCCTCCCTGCCTTCCTCTTCCCTCACTCCTTCCTTCCTT
CCCTCCTCTCTCCCATCTCCTGCCCAACCTACCTTCCTTTTTCTTTTTCT
CTCCCAATGTTTTCTATGTGGACCAGGCTGGTCTCANAACTTATTCTTGT
GCTTTTACCCTCCGAGTCTTGGGATTACAGACACCCTCTCCCCCCTAGTT
TTCCTCTCTCTCCCCCCTTCCCTTTTCTCTTCCATTCCCTTTCCTTCCCT
TTCCCTTTTTCCCCCTCTCTTTTCTCCCCCCTCCCTTTTTCCCTTCTTTT
TTCTTCCCCTCTTCTCCTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no462_m12.g1 MSMg01no462_m12.g1 CHROMAT_FILE:
MSMg01no462_m12.g1 PHD_FILE: MSMg01no462_m12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:36:54 2005
         (474 letters)



>mm_chr9_31157556_31158428
          Length = 873

 Score =  832 bits (430), Expect = 0.0
 Identities = 454/462 (98%), Gaps = 1/462 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   cactacaagctatgtatggtggcatctacctggaatctcagtactcaggaggctgacaca 60
           |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 201 cactacgagctatgtatggtggcatctacctggaatctcagtactcaggaggctgacaga 260

                                                                       
Query: 61  ggaggattgccatgagtttgaggccagcttaggctatgtagcaagttaagggccagcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaggattgccatgagtttgaggccagcttaggctatgtagcaagttaagggccagcctg 320

                                                                       
Query: 121 ggaatagagtgagaccttgtctcaaaaaccaacatgagcggatgacacagatgtcactgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaatagagtgagaccttgtctcaaaaaccaacatgagcggatgacacagatgtcactgt 380

                                                                       
Query: 181 gggcggggctgcttgccacttcgcttaacaacctgtgtttgatccctggaactggctcca 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggcggggctgcttgccactgcgcttaacaacctgtgtttgatccctggaactggctcca 440

                                                                       
Query: 241 cggttttattctctgtctgtatgcaaactatgtcatgtgcacatgcatgcttgtacacac 300
           ||| || || |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cgggtt-atcctctgtctgtatgcaaaccatgtcatgtgcacatgcatgcttgtacacac 499

                                                                       
Query: 301 acacaagttttaaagaactccaatgtgaacagtataaattggactgcagttttcctatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 acacaagttttaaagaactccaatgtgaacagtataaattggactgcagttttcctatct 559

                                                                       
Query: 361 tttctctttccttccttctttccatccctccctgccttcctcttccctcactccttcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 560 tttctctttccttccttctttccatccctccctgccttcctcttccctccctccttcctt 619

                                                     
Query: 421 ccttccctcctctctcccatctcctgcccaacctaccttcct 462
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccttccctcctctctcccatctcctgcccaacctaccttcct 661


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space:   400432
Effective search space used:   400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)