Query= MSMg01no463_b20.b1 MSMg01no463_b20.b1 CHROMAT_FILE:
MSMg01no463_b20.b1 PHD_FILE: MSMg01no463_b20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:23 2005
(298 letters)
>mm_chr9_108460069_108460766
Length = 698
Score = 557 bits (288), Expect = e-163
Identities = 291/292 (99%)
Strand = Plus / Plus
Query: 7 gaattcacactgtcttcctccctctgcctcttgagtgctcagagtaatggtctctcccac 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattcacactgtctacctccctctgcctcttgagtgctcagagtaatggtctctcccac 266
Query: 67 cacacctagccaaaaagtgtcatatacacaacactatagtataaatggatcatgaactcc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cacacctagccaaaaagtgtcatatacacaacactatagtataaatggatcatgaactcc 326
Query: 127 actagccacttcttttgagacattgtttcttctatgtagctttgggtggcctataaatca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 actagccacttcttttgagacattgtttcttctatgtagctttgggtggcctataaatca 386
Query: 187 ttctgtaactaggctggcctcacacaagagatctgtctgcctttgacagacagtactgag 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ttctgtaactaggctggcctcacacaagagatctgtctgcctttgacagacagtactgag 446
Query: 247 gttaaaagtgtgcatcaccacagcaggctctgacgtaacttcacagagggta 298
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gttaaaagtgtgcatcaccacagcaggctctgacgtaacttcacagagggta 498
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_b20.g1 MSMg01no463_b20.g1 CHROMAT_FILE:
MSMg01no463_b20.g1 PHD_FILE: MSMg01no463_b20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:23 2005
(478 letters)
>mm_chr9_108641319_108642196
Length = 878
Score = 841 bits (435), Expect = 0.0
Identities = 445/451 (98%), Gaps = 5/451 (1%)
Strand = Plus / Minus
Query: 1 caggccctgtctcatgctatgactcacttacttgatcagagaagtcacttacattcccag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 caggccctgtctcatgctatgactcacttacttgatcagagaagtcacttacattcccag 392
Query: 61 tatgggcgactgtgggcccttcccctccactgctctaaattacagtgctagtttacagct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tatgggcgactgtgggcccttcccctccactgctctaaattacagtgctagtttacagct 332
Query: 121 ctctggcaggaagctgggttccattttcctcactgtctgcttgctcgacaggagctactc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctctggcaggaagctgggttccattttcctcactgtctgcttgctcgacaggagctactc 272
Query: 181 agtcttaatgctctcatgggacgcatcatctgccattgatttctgaattcttgttttggt 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 271 agtcttaatgctctcatgggacgcatcatctgccattgatttctgaattcttgttttgtt 212
Query: 241 ttttttttttgttttgtttt-----tgagacagggtttctctgtgtagctctggctgtcc 295
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 211 ttttttttttgttttgttttgtttttgagacagggtttctctgtgtagctctggctgtcc 152
Query: 296 tgaaattcactctgtagacaaggctggcctcaaactcagaaatccacctgcctctgcctc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 151 tgaaattcactctgtagacaaggctggcctcaaactcagaaatccacctgcctctgcctc 92
Query: 356 ccaagtgctggggttaaaggcatgcaacaccactgcctggcgatttctagattttaaggt 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 91 ccaagtgctggggttaaaggcatgcaacaccactgcctggcgatttctagattttaaggt 32
Query: 416 taagaatttatcacatgggctggagttggct 446
|||||||||||||||||||||||||||||||
Sbjct: 31 taagaatttatcacatgggctggagttggct 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
