BAC Information

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BAC

Clone NameMSMg01-463H11
Chromosome9 (Build37)
Map Location 11,007,183 - 11,007,734
singlet/doubletsinglet
Overlap genenone
Upstream geneCntn5, LOC665154, LOC100039970, LOC665178
Downstream geneLOC100039989
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463H11.T7 (MSMg01no463_h11.b1)MSMg01-463H11.TJ (MSMg01no463_h11.g1)
ACCAG548112AG548113
length7411,277
length of high quality
(start - end)
552 (78 - 629)---
definitionCHROMAT_FILE: MSMg01no463_h11.b1 PHD_FILE: MSMg01no463_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:53 2005CHROMAT_FILE: MSMg01no463_h11.g1 PHD_FILE: MSMg01no463_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:37:53 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTTTCCATCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCAGAAATTGCCTAACCCCATTAAAAACATGGGGTATA
GAGCTAAACAAAAAAATTCTCAACAGAAGAATATTGAAGGGCTGAGAAGC
ACTTGAAAAAAATGTTCAACATCCTTAATCATCAGAGAAATGCAAATCAA
AACAACCCTGGGATTCCACCTCACACCAGTCAGAATGGCTAAGATAAAAA
ATTCAGGTAACCTCAGATGCTGGCGAGTATGTGGAGAAAAAGGAACACTC
TTCCATTGCTGGTGGGATTGCAAGCTGTTACAACCACTCTGGAAATCAGT
CTGGTGGTTCCTCAGAAAACTGGACATAGTACTACCTGGAAGTTCCAGCA
GTGCTTCTCCTGGGCATACATCCAGAAGATGTTCCAACTGGTAAGAAGCA
TCCTGTTAACAACTGAGCTGGTTTTGAAAGGTTTGTTGTATGTCTGTAAA
TTTTTAGCACTAATCTGCACACTACAGTTAAAAGAAAGATTTTAAAACCA
ACAGTTATTCATCCATCCATTTCCATTTCCCATCAAAGCCTATTTAGACT
TCATTTTCTTAAATGGTCATACAACTACAACTTCCCAAGGACTTTTCCTT
TATATTTAAATTTAAAATCTTTTAAAAAGTTTGTAGTTAACTTTCATGTT
TGTGTTTTAAAAAGAAAAGGGCTTTTTCTCGAAATTTAAAN
ATTCTTCTCCCAAATGCACTACNCGGGGCTAGGGACCTCGCGCGTGACCG
ATCTTGTGTTTCCTCACACCATTGTAGGGGNGNAGCACCTAATANGAAAT
TTTTTCCCCCCGAACAACTTACTTGTCAAACGAGGCACAATATGAAGTTT
GTCGCACAATCTACTACAGCCTGCTACAAACTTATATACGCTATAGATCT
CGTTAATGTAATAATCCTGTAGTACTAATATATTAGTGATTGTATACATC
GCGTCTTAGTACAATCTCTTCATCCTTGACTGTTTTGTCATAGATATGAT
AGCTAAGTTGTGTCTGATTTCGTCATATGACATCTCTTTGTTTAAGACAA
TCATNAACATTGCTTTTATGGTAACCACTTTCATTACATAGCCTCTTCAT
TATCTATACTACTTATTCGCCAGTCCGCACCAACCACCTACATATCTCTA
CGATGTCAACACTTGCGCCTCACTAATTCTCAGGCCCTTCCGTGACCATA
TTATTTTTTTTCTTGCACCGCCCATGATGCATCTACCCTCACACACAACA
ATCCTCATCGTGTCTTTATATCCTTCTTCCTCAATACATTGCTCCTAATC
TAACCCATTCTTATTCTTATTTGTCTCTCAACATAATCTCATTATCCTAC
TACCATGTTCTCTCCTCCATATCCACTCNATATATCACAATATATATTCA
TCATTATAAACCCTCTTCTTATCTCCACCTACATTCTTCATCTCTTCTAC
ATCTTTACTCACTTTCCTTATACTCATCTCTATCGTTTAATTCGCATCCT
CACCGTCTCGATAATCCTCCTCTTCGTCTCTTATCTCGTCTCCTCTATAT
CATCATACACTTTCCTTACATTCATCCGCTCTCACTATATCGTATGATAC
TCACGTATATCACTTCTTTATCACCTCAATCCAGCTCTCTTTCACTGTNT
CATGCCTGCACCACCACCTACTTCACCACTCGTTGTGTCACTACGATTAA
TTTAATTTCACATAACATATTCACCACCCTTCGTATGTTTGCGTATCTCA
TACTACTCCTTACACTCTAGCTCGAATGAATCCACGCTACACTATTTGTT
ATGTGTCACACCCTTAACTATGTCGACAAAATTTCCTCAGATATTGATAT
ATTACTATCTATTTCTACTCATACTCTTCTCTGAATGTATATAACTCCAT
ATTCCTTACATATCTCTCATTAACCATTACTACTCTCTCCTTGGCTTACC
TTACACACTATATCACACNCACACCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_h11.b1 MSMg01no463_h11.b1 CHROMAT_FILE:
MSMg01no463_h11.b1 PHD_FILE: MSMg01no463_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:37:53 2005
         (552 letters)



>mm_chr9_11006983_11007934
          Length = 952

 Score = 1052 bits (544), Expect = 0.0
 Identities = 550/552 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccccattaaaaacatggggtatagagctaaacaaaaaaattctcaacagaagaatattga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccccattaaaaacatggggtatagagctaaacaaaaaaattctcaacagaagaatattga 260

                                                                       
Query: 61  agggctgagaagcacttgaaaaaaatgttcaacatccttaatcatcagagaaatgcaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agggctgagaagcacttgaaaaaaatgttcaacatccttaatcatcagagaaatgcaaat 320

                                                                       
Query: 121 caaaacaaccctgggattccacctcacaccagtcagaatggctaagataaaaaattcagg 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 caaaacaaccctgggattccacctcacaccagtgagaatggctaagataaaaaattcagg 380

                                                                       
Query: 181 taacctcagatgctggcgagtatgtggagaaaaaggaacactcttccattgctggtggga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taacctcagatgctggcgagtatgtggagaaaaaggaacactcttccattgctggtggga 440

                                                                       
Query: 241 ttgcaagctgttacaaccactctggaaatcagtctggtggttcctcagaaaactggacat 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgcaagctggtacaaccactctggaaatcagtctggtggttcctcagaaaactggacat 500

                                                                       
Query: 301 agtactacctggaagttccagcagtgcttctcctgggcatacatccagaagatgttccaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agtactacctggaagttccagcagtgcttctcctgggcatacatccagaagatgttccaa 560

                                                                       
Query: 361 ctggtaagaagcatcctgttaacaactgagctggttttgaaaggtttgttgtatgtctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctggtaagaagcatcctgttaacaactgagctggttttgaaaggtttgttgtatgtctgt 620

                                                                       
Query: 421 aaatttttagcactaatctgcacactacagttaaaagaaagattttaaaaccaacagtta 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatttttagcactaatctgcacactacagttaaaagaaagattttaaaaccaacagtta 680

                                                                       
Query: 481 ttcatccatccatttccatttcccatcaaagcctatttagacttcattttcttaaatggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttcatccatccatttccatttcccatcaaagcctatttagacttcattttcttaaatggt 740

                       
Query: 541 catacaactaca 552
           ||||||||||||
Sbjct: 741 catacaactaca 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space:   510564
Effective search space used:   510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)