BAC Information

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BAC

Clone NameMSMg01-463K09
Chromosome9 (Build37)
Map Location 44,377,045 - 44,377,192
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384931, Pvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1
Downstream geneDdx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-463K09.T7 (MSMg01no463_k09.b1)MSMg01-463K09.TJ (MSMg01no463_k09.g1)
ACCAG548250AG548251
length781838
length of high quality
(start - end)
59 (136 - 194)149 (81 - 229)
definitionCHROMAT_FILE: MSMg01no463_k09.b1 PHD_FILE: MSMg01no463_k09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:09 2005CHROMAT_FILE: MSMg01no463_k09.g1 PHD_FILE: MSMg01no463_k09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:38:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCATCTCCACTCATAATTTGGGCGCGAAACGAGTCACTATTTCAAAACAG
CCCGCGGAATCACTTTGTAGCACAAACTGGCCTTGAACTCACAGAGACAC
ACATGTAGAGGGAATCTATTGTGCAATGTGTAGAAACATTTACCTGTCAT
TTTTTATTTCTTAAGCCTTGGCCAATGAGCTGAGGCAAGATTATAAGGAG
AGACATCTGGCAGAGACAGAGGAATTCTGGGAAACTACTAGTCAGGTGCA
GTATATTTTACCCCAGAAACAAAAGGCAGTCGTATTGAACTGAGGACCGG
GTAACCAGCTATGTGGCATTTTTCTTTATTACATAAACAGGTGATCAACA
TATGAGCTAGTCTTGGACTAGAGCCAAAGCTATTGGCCTAAGCTTTTATT
TATATATAAATCTCATAGTCCCTATTTTCTGGTATCACATTGGACGAGTG
TACAAATTCTAGGTTACCCATGGCATCCTTTTACTACACACCCATGATGC
AGGCTTTGTTTTATTTTTTACACCTAGCCACTCCCACGCTGAACGCCTCC
TATTTACTCCACGACTTGTGTCATCCTGGCAAGAACTCTGCCCTCGTTTA
CTATACGACACTTTCTATTAATCTCTCATTAATTATTTTAATTGCCTGCA
GATTTAATAGCTTGTGCTTTTTTTGATTTTTTATATTCTACCTGCAGATG
TTCTATATTTCGTGTACTCTTTCTCTATATAGTCTCCCTCCTCTCTTGGC
ATACATCCTCTGTGATTCCCTATTACTTCCT
TCTTCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTTCAAGAAATTCCAGACTAGCCTGGGATACAG
AGTAAAACCTGTCTCAAAACCAAACCAATGAACAACAGATCAAGCTCAGT
TGCCTTCTTTTCCTGTTGTTTTTGATATGAGCTTTGTATAACTGTTGGTG
GGGCTTTTGTTTGTTTGTTTGGTTGGTTGGCTTCGCTTAATGTTGTTTAT
AAGCTTCTTCTTTGCCTTGTACATTCGTCTACAGGCTACCAAACTCACTA
TTCTTGCCGAGGATGGACGGTTTTTCATCGTTTTCCTCACCAACAAAGGC
TAGTGACCCCTCGTTTTTTTCTCTCCCCTCATCATTTTGACCTCGTCTTT
TTGGACTCTCATACTATTCTTTTTTTCCCACCCTATTATATTTTTTCCTT
TATATCGACTGCTTTTATTCTTCCCATCCGATTTTCTCTTTCTCTTATTC
TATTTTTCCTCGTAAGTTTTATATATATTTCTATCTCCTTCTTTTTCCTT
TCTCTTTTCCTTATTACCATTATGTTCTTTGTTTCCTCTCTTCTTTTATC
TATTTTATTTCCTTTTTTCTTTTGCCATTCTCCATATGTATCCCTTATTT
TTATACCCATATCCTCCCTGTATACTATTTCCCGTTCTTTTATCTTTCCT
CATCAGTATTTTAATCTACCTCTATTTTTTTTTTTCTTTTCTACTGTTTA
TTATTTCTTCTCTTTTAATCTTCTATGTTCCGCTATTACATATCATGTTT
CATTTCTCTTTTTATCTTTACTCCACTCCCATGTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no463_k09.g1 MSMg01no463_k09.g1 CHROMAT_FILE:
MSMg01no463_k09.g1 PHD_FILE: MSMg01no463_k09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:09 2005
         (149 letters)



>mm_chr9_44376845_44377393
          Length = 549

 Score =  279 bits (144), Expect = 7e-80
 Identities = 147/148 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagactagcctgggatacagagtaaaacctgtctcaaaaccaaaccaatgaacaacagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagactagcctgggatacagagtaaaacctgtctcaaaaccaaaccaatgaacaacagat 260

                                                                       
Query: 61  caagctcagttgccttcttttcctgttgtttttgatatgagctttgtataactgttggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagctcagttgccttcttttcctgttgtttttgatatgagctttgtataactgttggtg 320

                                       
Query: 121 gggcttttgtttgtttgtttggttggtt 148
           ||||||||||||||||||||| ||||||
Sbjct: 321 gggcttttgtttgtttgtttgtttggtt 348


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)