Query= MSMg01no463_m20.b1 MSMg01no463_m20.b1 CHROMAT_FILE:
MSMg01no463_m20.b1 PHD_FILE: MSMg01no463_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:21 2005
(542 letters)
>mm_chr9_61048811_61049752
Length = 942
Score = 1007 bits (521), Expect = 0.0
Identities = 536/541 (99%), Gaps = 1/541 (0%)
Strand = Plus / Plus
Query: 3 gaattcatgtcctttgcc-cagcagtataggctctgagccactaagccagctctccagct 61
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gaattcatgtcctttgcaacagcagtataggctctgagccactaagccagctctccagct 261
Query: 62 cttggctttgacttctaaacctgatctatgaactccatcacttgctttcactctgaggca 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 cttggctttgacttctaaacctgatctatgaactccatcacttgctttcactctgaggca 321
Query: 122 cctagcggttcctttcttatggcaaatgaaggcagccactgtgtttgctgatgtcctccc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cctagcggttcctttcttatggcaaatgaaggcagccactgtgtttgctgatgtcctccc 381
Query: 182 aggtgccaggcatcttacctgctggtcgtctaggaaataaagcctagagccacaggggca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggtgccaggcatcttacctgctggtcgtctaggaaataaagcctagagccacaggggca 441
Query: 242 ggaggggaacaaaaagcagaatagattgtttatttaaacctgagacgccaaagtttaaaa 301
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct: 442 ggaggggaacaaaaagcagaatagattgtttaattaaacctgagaagccaaagtttaaaa 501
Query: 302 aaaatacacagccccagacaattgtgccccatccctcaataaaattttaaactctataac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 aaaatacacagccccagacaattgtgccccatccctcaataaaattttaaactctataac 561
Query: 362 tctagcatcttatgcagatagacagacacacagagggggcatgcatgtgggtttaggaac 421
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tctagcatcttacgcagatagacagacacacagagggggcatgcatgtgggtttaggaac 621
Query: 422 ctttgagtatatgtatataaaagtacatatctcagcatatatgtccttgtgggttcacac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ctttgagtatatgtatataaaagtacatatctcagcatatatgtccttgtgggttcacac 681
Query: 482 atttgcagatctctgtatgctggtgtgcctagggcaaattgagagctatgtgtctccagg 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 atttgcagatctctgtatgctggtgtgcctagggcaaattgagagctatgtgtctccagg 741
Query: 542 g 542
|
Sbjct: 742 g 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no463_m20.g1 MSMg01no463_m20.g1 CHROMAT_FILE:
MSMg01no463_m20.g1 PHD_FILE: MSMg01no463_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:38:21 2005
(516 letters)
>mm_chr9_61227088_61228001
Length = 914
Score = 938 bits (485), Expect = 0.0
Identities = 509/517 (98%), Gaps = 4/517 (0%)
Strand = Plus / Minus
Query: 1 taaagagcagggagaaaaggagcccctggtaaccacacaaccctgctgcagaagagcgca 60
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct: 714 taaagagcagggagaaaaggagcccc-ggtaaccacacaaccctgct-cagaagagcgca 657
Query: 61 tggaatagtagaattgggagtagggcttcccagcaggcttctctatcttcatctagtcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tggaatagtagaattgggagtagggcttcccagcaggcttctctatcttcatctagtcct 597
Query: 121 aaggtcatctcaatggtcaggtgtacaagaaggaaaagactcgggaggagtacagaaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 aaggtcatctcaatggtcaggtgtacaagaaggaaaagactcgggaggagtacagaaagc 537
Query: 181 tttgctctgtacacttctatcgtctaccacagacaagggatccactgaagcctgagatga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tttgctctgtacacttctatcgtctaccacagacaagggatccactgaagcctgagatga 477
Query: 241 gagggttaggtctttctctagctggatgggacaaagttaaaaagagcttcaggctcagta 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gagggttaggtcaccctctagctggatgggacaaagttaaaaagagcttcaggctcagta 417
Query: 301 attcccaaggtacagcaaagatggtgccctgctggggagatcacacaacccccacaattc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 attcccaaggtacagcaaagatggtgccctgctggggagatcacacaacccccacaattc 357
Query: 361 caaggtagagcaacaaggcagctaaagtcaaagaacccacggtgtgggtgaatgaaggag 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 356 caaggtagagcaacaaggcagctaaagtcaaagaacccacggtgtgggggaatgaaggag 297
Query: 421 ctcccggcaaagaagtcaatctcaccgctcaacccagatgccacacaaacaggcactg-c 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 296 ctcccggcaaagaagtcaatctcaccgctcaacccagatgccacacaaacaggcactgcc 237
Query: 480 cctagtaccagggcctgcatccccaatcctactgcca 516
|||||||||||||||||||||||| ||||||||||||
Sbjct: 236 cctagtaccagggcctgcatcccc-atcctactgcca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 516
Length of database: 914
Length adjustment: 10
Effective length of query: 506
Effective length of database: 904
Effective search space: 457424
Effective search space used: 457424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
