BAC Information

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BAC

Clone NameMSMg01-464E23
Chromosome9 (Build37)
Map Location 90,340,509 - 90,340,989
singlet/doubletsinglet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464E23.T7 (MSMg01no464_e23.b1)MSMg01-464E23.TJ (MSMg01no464_e23.g1)
ACCAG548756AG548757
length759791
length of high quality
(start - end)
476 (68 - 543)476 (74 - 549)
definitionCHROMAT_FILE: MSMg01no464_e23.b1 PHD_FILE: MSMg01no464_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:02 2005CHROMAT_FILE: MSMg01no464_e23.g1 PHD_FILE: MSMg01no464_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCGAGATCCGCGGAATTCT
TTGTTCATTTCCGACCCCGTTTGTTAATGGGGTTATTTGATTTCCTGGAG
TCCACCTTCATGAGTTCTTTATATATATTGGATATTAGTCCCCTATCCGA
TTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGCCCTTTTTGTCT
TATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGGTCC
CATTTATCGATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAG
GAATTTTTCCCCTGTACTCATATCTTCAAGGCTTTTCCCTACTTTCTCCT
CTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGTTCCTTAATCCACTTA
GATTTGACCTTAATACAAGGAGATAGGAATGGATCGATTCACATTTTTCT
ACATGATAACCACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTT
TTTTCCACTGGATGGTTTTAGCTCCCTTGTCACAGATCAAGTGACCATAG
GTGTGTGGGTTCATCTCTGGGTCTTCTATTCTGCTCCATTGGTCTACTTA
TCTGTCACTATACCAATACCATGCAGTTTTTATCACAATTGCTCTGCATT
ACAGTTTTATGTCGGGCATGGTGATTCCACCAGAGGCTCTTTCATCCTTG
CAAAGAGCTTTTGGTATCCTCAGTTTTTTGTTATTCCCGATTGATCTGCT
GATTGCCCT
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGCACATACACAATAGGAACGCCCT
CAGGAGATGGTTTTTTATAGATTTGTGCACATATACACATAAATATGTAA
AAAGAGAAAAGAGGTCATCAACTTGAGAAGGAGCCAGAGGGGCATGAGGG
GGGCTGGGGGAGAGGACACAGGAATGGTCAGAAGCAGGAAAGTAAAGGGG
GGAAGTGATGTAATATTTTAATTAAAATATATTAAGAAACATAAGAAAAT
GGGACTCCTCTTTTTTTTTTAAATCCGTTGAAGTTCTCAAATACCTTCAG
TTTAAAACCATCATTTATTCTGAGATTCTGTTGTGTTGCTATACAACTGA
TACAGGGATTAGCCATCTTGGAGGCTATTCAGGATGAATTACTCCACCCC
ATTGTCAACTTTCAACCGCACTTCCCATTCCTGTGGTAACTCTAGGAAGG
TAAACACCAGCTTTGTCATGCCTTAGGGTTCACATTGCTATATGAAAAGG
TAGAGGTGTCTGTGCTATGTTGAAGCCCATTAAGATAAAGTTACCTCTTG
TATGTCCAAAGACTGGGATCTTAGGTTTATCACCGCATCCGGGGAGAGAA
AGATATGATCTTTTAAATTACCCCAAATGGGCCTGCGTCTGGTTCCTCCT
CTTTAAAAAGGAACGCCTCACCCCGTCCAAACCCCCACGGTACAGCCTTT
TTTTTCCCGGTGGGCTTGGTACCTTTAACACCCCTGGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_e23.g1 MSMg01no464_e23.g1 CHROMAT_FILE:
MSMg01no464_e23.g1 PHD_FILE: MSMg01no464_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:02 2005
         (476 letters)



>mm_chr9_90340313_90341189
          Length = 877

 Score =  864 bits (447), Expect = 0.0
 Identities = 471/481 (97%), Gaps = 5/481 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgcacatacacaataggaacgccctcaggagatggttttttatagatttgtgcacata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 catgcacatacacaataggaacgccctcaggagatggttttttatagatttgtgcacata 256

                                                                       
Query: 61  tacacataaatatgtaaaaagagaaaagaggtcatcaacttgagaaggagccagaggggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tacacataaatatgtaaaaagagaaaagaggtcatcaacttgagaaggagccagaggggc 316

                                                                       
Query: 121 atgaggggggctgggggagaggacacaggaatggtcagaagcaggaaagtaaa----ggg 176
           ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    |||
Sbjct: 317 atgagggggactgggggagaggacacaggaatcgtcagaagcaggaaagtaaaggggggg 376

                                                                       
Query: 177 gggaagtgatgtaatattttaattaaaatatattaagaaacataagaaaatgggactcct 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gggaagtgatgtaatattttaattaaaatatattaagaaacataagaaaatgggactcct 436

                                                                       
Query: 237 c-ttttttttttaaatccgttgaagttctcaaataccttcagtttaaaaccatcatttat 295
           | |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 437 cttttttttttttaatccgttgaagttctcaaataccttcagtttaaaaccaccatttat 496

                                                                       
Query: 296 tctgagattctgttgtgttgctatacaactgatacagggattagccatcttggaggctat 355
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctgagattctgttgtgttgctatacaactgatacagggattagccatcttggaggctat 556

                                                                       
Query: 356 tcaggatgaattactccaccccattgtcaactttcaaccgcacttcccattcctgtggta 415
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 tcaggatgaattactccaccccattgtcaactttcaaccgcacttcccattcctgtggta 616

                                                                       
Query: 416 actctaggaaggtaaacaccagctttgtcatgccttagggttcacattgctatatgaaaa 475
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 agtctaggaaggtaaacaccagctttgtcatgccttagggttcacattgctatatgaaaa 676

            
Query: 476 g 476
           |
Sbjct: 677 g 677


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 877
Length adjustment: 10
Effective length of query: 466
Effective length of database: 867
Effective search space:   404022
Effective search space used:   404022
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)