BAC Information

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BAC

Clone NameMSMg01-464G05
Chromosome9 (Build37)
Map Location 73,586,700 - 73,586,956
singlet/doubletsinglet
Overlap geneUnc13c
Upstream geneNedd4, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
Downstream geneWdr72, Nr1h2-ps, LOC100040764
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464G05.T7 (MSMg01no464_g05.b1)MSMg01-464G05.TJ (MSMg01no464_g05.g1)
ACCAG548815AG548816
length807744
length of high quality
(start - end)
---246 (74 - 319)
definitionCHROMAT_FILE: MSMg01no464_g05.b1 PHD_FILE: MSMg01no464_g05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:08 2005CHROMAT_FILE: MSMg01no464_g05.g1 PHD_FILE: MSMg01no464_g05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGTCTTATTTTCGGTCGCTAAAGGATCACTAATTTCAGAAATCCGNGGN
ATTCCATGTTTTTCTATTATGACTTTCTGNGACAGATAAACTTGGACTAT
CTCCAGTGTTTGATAAGACCCTGGGTACTGTGTACATGAGGTGGTAAGTA
AACAATGCTTCTCTCTGATTTTACCAGGCTATGATCACTCTGACCCCTTA
TAGAATACGTCCTAGTGAGACGTGGTACTCTTGAATGCTCACTTTATTTG
TTTTTTCTTGTCTCTGAGTTGTCACATCCTCCCTCTTTTCCTATTGTCCC
CATGTGTTTTTGATCACTCATCGACTTTTTTTTTTTTACATCGCAGGAGG
TTCGCATGTCTCTTTGCAGTTTCTATTTCTTTCTCACTTTTTTGCTTTCT
CCCCTGTCGCCCGTTTGTGTTTCATTTTCTCTTACTTTCTGCTCCGCTGC
TTATGGTTTCGCTTTTCCGACCCTTCGCTGCCACTTTTATTCTTCCCGTT
TACCTCTATTGTCTATATTTTTGCTTGCCCTATTTTCCTCTTTCCCCACT
TCCCCTATTTGTCTTCCGCTCCCCTACTTTTCATCTTCACCTCTCTTTTT
TTCCCTCCTCTTCTTTTTTTTTTCCACTCTTTTTCTTCCCCCCCCCTTCC
CCCTCTTATTCTTTCCGCCTTTTTCCCTCCTTTTTTTTTATCTCTCTTTC
CCCTTTCTTTTTCTTACTTTCCATATTCCGCCTATTTCTTCATTCCCCCC
TTATCTTTTGCTTCTTTTACTCCCCCTTTCCCCCTTCTTTCTTTCCCCTT
CCGTTCT
CCTCGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTGCGGAAAATCAACTTTACATAGAAGGGAAAATATTC
CTCACAGGGAAACTGGTTCCTTTTTATGTAATTTCACTATCAACCAGAAT
GTCTCACTTTCTTTCTTTCTTTTTACTTTTTACTTATAACTTGAATGATA
TGAGTTTTCATGTAAAACTCATAATTTTCTATTTTGCAATTCTAGTATTT
TTCCTAATAAGTAGATCTGTCTGTTTCAACTTCCCCATCCTTCTTTCACT
CCCCTAATGTCTCTGTGTTNATANTCTTGTGTGTTAATATACTTGATGTG
ATATGTACATTCTTGTGTGCTTATATACCTAATGTGTATATATACTTTAT
GTGTTTATGTGTGCTTCTATGCTTTATGTGCAACATGTGTGTTTATACAC
TTGATGTGTACCTGTGTGTGTCTATTCTTGAGTATTCTTCAAACTTCTCC
TTTGTTCTCAGCCTTACTCTCTGCTCATTTGCTCAACAAATGTTCCACAC
TCTTCTGCAATCCTCAGGTCTCCTGCCTTAGCGCATTACCCTCTATTTCA
AGAACATATTTTTGCGTTCTCCTTAACTGAATATTTCGTCCTCTCACCCC
TTATTGTTCATATTTTCTAGCCCCCACCACCTTACTATCCCCCCTTTTCC
CCTTGTCCTCATTTGCATCCTTAACTTTTTTGTTTATTTTGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_g05.g1 MSMg01no464_g05.g1 CHROMAT_FILE:
MSMg01no464_g05.g1 PHD_FILE: MSMg01no464_g05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:08 2005
         (246 letters)



>mm_chr9_73586500_73587145
          Length = 646

 Score =  385 bits (199), Expect = e-111
 Identities = 237/257 (92%), Gaps = 12/257 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   caactttacatagaagggaaaatattcctcacagggaaactggttcctttttatgtaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 caactttacatagaagggaaaatattcctcacagggaaactggtttctttttatgtaatt 260

                                                                       
Query: 61  tcactatcaaccagaatgtctcactttctttctttctttttactttttacttataacttg 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcactatcaaccagaacgtctcactttctttctttctttttactttttacttataacttg 320

                                                                       
Query: 121 aatgatatgagttttcatgtaaaactcataattttctattttgcaattctagtatttttc 180
           |||||||||||||||||||| ||| ||||||||||||||||||||| ||||||| |||||
Sbjct: 321 aatgatatgagttttcatgtgaaattcataattttctattttgcaactctagtagttttc 380

                                                                       
Query: 181 ctaataagtagatctgtctgtttcaacttccccatccttctttc------------actc 228
           | |||||||||||||||||| |||||||||||||||||||||||            ||||
Sbjct: 381 caaataagtagatctgtctgcttcaacttccccatccttctttccccatttctttcactc 440

                            
Query: 229 ccctaatgtctctgtgt 245
           |||||||||||||||||
Sbjct: 441 ccctaatgtctctgtgt 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)