BAC Information

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BAC

Clone NameMSMg01-464G17
Chromosome9 (Build37)
Map Location 72,297,018 - 72,297,569
singlet/doubletsinglet
Overlap geneMns1
Upstream geneGrinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, LOC666007
Downstream geneTex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, Ccpg1, LOC100041896, Pigb, Rab27a, 2410004A20Rik, BC003885, EG436081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-464G17.T7 (MSMg01no464_g17.b1)MSMg01-464G17.TJ (MSMg01no464_g17.g1)
ACCAG548839AG548840
length761761
length of high quality
(start - end)
59 (248 - 306)542 (77 - 618)
definitionCHROMAT_FILE: MSMg01no464_g17.b1 PHD_FILE: MSMg01no464_g17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:11 2005CHROMAT_FILE: MSMg01no464_g17.g1 PHD_FILE: MSMg01no464_g17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:39:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATATTGCGGCGCCAAANGAACACTATTTCTTTATCGCGCGGAANCAA
AGGCTGACAAAAACATGAGGAGCNTGAGGAGCAGATGGCTGCAGAGGAGA
AAACGTTTGTCCTCCTTAGGGATGAACCTCCTGGCTGGTTTTATGTGCCA
ATGGTCAACCTTATACCAACTAACTGGATTCAGAAGAGAAATGATTTGAG
AGAGAATTGTGGGAAGCAACCTGAGTAGGAAAGTGTGGATTTGAGACATG
GATATGGACAAAATGCAAGAATTCTAAGCAAAAAACCCCATCAACCCCCA
ACCAGTTTTTTTTTTTTCAGATAGAGCAATAAGACAAATAACAAACAGGA
GACTTATAGGAAAGAATTATTCCTACGTGAATACGTCTTGATCCTGTATC
TAAAATGTAGACCCTAACCATTCTGCTACAAAAACATAGAATCCAATAAA
TACTTTCAGCCAGGTATTAGCTTATAACACCAGCTATAAAATTAGTTGCT
TTATCTATATACTGGTAATGACCATGATACTTAACACTCAGTAATGACAT
CCCTTTTACAATAATTTAACATCCTCCCATTATTCATCAGAACACTTTAC
TAAGACCTCTACCCTCCTTTTTGATACACCCCCACCCGTAATTCTATTTC
TCTTGATACCCGAACGTTTTTTTTTATCCGGTGACCGCCTTCTCTCTGGT
CGATCTTTACTTTTTTTAATATCGCTACGCCTTATCACCCTCTTCCTTAC
CTCGCCTGCTN
CGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAGGGCACAAGACTTCTGGAGACA
AAAGAAGCGTGAGGAGATGGAGGAAGAGAACCGGAAAATCATAGAGTTTG
CAAACATACAGGAGCAAAGAGAAGGCGAGCGGATGGCCAGAGTTCACGAG
ATCGAGGAAAAGAGGGTCCAGCGTCAGAATTTGGTATAAAAATACTACTT
TTTAAAGAGTGCTAAATTCCTGAAACAGTGGCCCAATCCAGTTCCTAAAC
AGGTGTTTTATTAACAGCTGATTTTGCAGCTGGAGGAAACACTGCGGCAG
CGGGATGACCTGGAGCAAGTGCGGCAGGAGCTGTACCAGGAGGAGCAGGC
AGAGATCATCAAATTGAAAGTGAAAGTAAGTGAGCCTCAGAGGGAGGGAA
GGTTAGGGAAGAGAATCCACGGGGCAGGAAGATAGCAGAGTTAAACCCAG
CCATAGGGTGGCTGCATTGTGCGTCAACCTTATCAATGCTGCAGTTAAGA
GACTTGACAAAAATAGAGTGTTCTGAAGAGCTTGATGCAGCACAGCCCAC
ACAGCTTAAATGAGTGCACATGCAAGCTCAAAGCAGGATGGAGGAAAACA
CTATGCTACGCAAAGCAGACTGGAGTGCGAATGTTAATATGAGGCAAAGT
CAACTGTGCGACATGTAAGTTTGTAGTCTAAATATAGTCATCCTTGTATA
TGCCTGTGACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no464_g17.g1 MSMg01no464_g17.g1 CHROMAT_FILE:
MSMg01no464_g17.g1 PHD_FILE: MSMg01no464_g17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:39:11 2005
         (542 letters)



>mm_chr9_72296818_72297759
          Length = 942

 Score =  924 bits (478), Expect = 0.0
 Identities = 529/552 (95%), Gaps = 10/552 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagggcacaagacttctggagacaaaagaagcgtgaggagatggaggaagagaaccggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagggcacaagacttctggagacaaaagaagcgtgaggagatggaggaagagaaccggaa 260

                                                                       
Query: 61  aatcatagagtttgcaaacatacaggagcaaagagaaggcgagcggatggccagagttca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatcatagagtttgcaaacatacaggagcaaagagaaggcgagcggatggccagagttca 320

                                                                       
Query: 121 cgagatcgaggaaaagagggtccagcgtcagaatttggtataaaaatactactttttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgagatcgaggaaaagagggtccagcgtcagaatttggtataaaaatactactttttaaa 380

                                                                       
Query: 181 gagtgctaaattcctgaaacagtggcccaatccagttcctaaacaggtgttttattaaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtgctaaattcctgaaacagtggcccaatccagttcctaaacaggtgttttattaaca 440

                                                                       
Query: 241 gctgattttgcagctggaggaaacactgcggcagcgggatgacctggagcaagtgcggca 300
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gctgatgaagcagctggaggaaacactgcggcagcgggatgacctggagcaagtgcggca 500

                                                                       
Query: 301 ggagctgtaccaggaggagcaggcagagatcatcaaattgaaagtgaaagtaagtgagcc 360
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 501 ggagctgtaccaggaggagcaggcagagatcatcaaactgaaagtgaaagtaagtgagcc 560

                                                                       
Query: 361 tcagagggagggaaggttagggaagagaatccacggggcaggaagatagcagagttaaac 420
           ||||  ||||||||||||||||||||||| |||||||||||||||||||||| |||| ||
Sbjct: 561 tcagccggagggaaggttagggaagagaagccacggggcaggaagatagcagggttagac 620

                                                                       
Query: 421 ccagccatagggtggctgcattgtgcgtcaaccttatcaatgctgcagttaagagacttg 480
           |||||||||||| |||||||||||| |||||| | |||||||||||||||||||||||||
Sbjct: 621 ccagccatagggcggctgcattgtgtgtcaacgtcatcaatgctgcagttaagagacttg 680

                                                                       
Query: 481 acaaaaatagagtgttctgaagagcttgatgcagc----------acagcccacacagct 530
           |||||||||||||||||||||||||||||||||||          |||||||||||||||
Sbjct: 681 acaaaaatagagtgttctgaagagcttgatgcagctgggtcagtcacagcccacacagct 740

                       
Query: 531 taaatgagtgca 542
           ||||||||||||
Sbjct: 741 taaatgagtgca 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space:   495824
Effective search space used:   495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)