BAC Information

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BAC

Clone NameMSMg01-465F13
Chromosome9 (Build37)
Map Location 79,164,606 - 79,165,165
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
Downstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218, LOC666490, Senp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465F13.T7 (MSMg01no465_f13.b1)MSMg01-465F13.TJ (MSMg01no465_f13.g1)
ACCAG549548AG549549
length7501,474
length of high quality
(start - end)
568 (67 - 634)---
definitionCHROMAT_FILE: MSMg01no465_f13.b1 PHD_FILE: MSMg01no465_f13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:25 2005CHROMAT_FILE: MSMg01no465_f13.g1 PHD_FILE: MSMg01no465_f13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTCACATTTCAAAGACGGGCCGNGGAATTCCATA
CTTTCATTGATTGCCCACACACACACACACACAGCACACACACACACACA
CACACACTCACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAAATGTTAGTCATCATTTTTTAAAACTTGGTCT
TTTTTTATTGCTAGCTACTTTTCCTCTTCTGCTGGCCTGCATACACTGAG
TTCTAGATCGCTGTCTATTTTAATCATAAGTGTGTCCCCAGCACCTAGTA
GGGTATTTGGTTTTAGAAGATGCTCAGTAAATTCTGAGCAAGTCAATTAA
ATGAAAAGCAGATGAGCAATATTCTCAAGCTCTGAAGCAGCTTTTGGTTG
TGGGTGAAATCAGTGGTACAAGTTTTTCATATTACCAAGGACAGAATCAG
CGTAAGGAATGATGCTGTTGAAAGTAACATACTTTCCTAACTGCATCAGT
TGCGTGTAAAAGCAATAAACAATTCTCAAGAAAAATCCAGAGCAAATACT
TCGGTTGTCCAAGTATGGGGAGGAGCTGCCCAGCAGAGTTTTAGGGGAGA
GTGGTGACTGTCTTTTTCCACCAAGAGTGAGCCAATTCTGCAAAGGCCTA
TGACTTCTGCCATTGATTCTGTTATTCTGGTTCTTGGAATTGTATTTGCA
TGAACAGTGTCTGATACTATAGAAGTCAGTGGAGGGTAAAAAACTAAAGG

AGAGTCACACCGCGAGAGNGGGNCGGTGGTAATCTCCCACAGCAACCACG
GGGCAACGTGCGACGGATTTTCGATATTATATTTTATANATACGCGGCGN
CGGACGCGTTAACAGCAAACTATCACACATAATTAGAGAGTACAAATAAA
GAAATATAATACTATACAAGATATACACTATATATAGACCAACAAGTCAT
GTAANCATAGCGANTAACACTATACAACGCCTCCGACCGCGCGAGTCACC
TCGGCTTATTCCTATCTCCATTCATTGCACGCTCGCTCGCTATAGGCGCG
AGCGACGAGTAGCAGTCTATCTCGATCGCAAACGTGTGCGTGCGTAGGTA
AAGATGAGATAGGACTNAGATCGTACGAGCGCCGTACTGACTAGAGCGTA
CAATGCGGATGAATCACGACGCAGATATAACGACACATATGATATATAAC
ATTCGAGCGCAGAGAGAATTATACAATCAGATATTCCACACACCTATAAT
GGACGGCGCATCTTATGTTCGATCGCCATCTATATGCGTTTGTTAAATAG
TGTCGGGCANTTATATATTTTGTCACGCGTCTGGCGCGTGCCGACGTCGC
GACTCTGGATATATATATGAGTTTGTATNCGACAAGTTNTTTACATTTAT
GTATCTGCAGTCGACAATCGGAGCTCGTATAGAAGTAGATATAATAGACT
CAACATGACACGTATGATATGTAGCTTGTATGCCGAGNGTTACATTACTA
TAACGAGACGAATTGTTATGTACGAGCGAATGCAATGACAGCACAACTAT
ATACGATGAATGAGATGAGATGTTGCGCATGGAATNGCAGGACGCGTGAT
GTATATATATGACACGAAACAAACTCTAGTCTATAAGTAATAGCGTATAT
CACAATATATGTAATATACGACACATCACATGTATTATATACTAGCTACA
AGCATCACGCCGCTATATNCAAGAACTGACATANTAGGGCGCGTAATCTC
GGCGACAGACNGACCATCGCCTACATTNTATACATCACTCTACTCGCCAG
CGCGACGCGGCGCGCGNCACACTGATATATATCGGACAGACGACCATACG
GTGAAGATACATGNTTGAGAGCGCGTGGTTATTTCCATTATATATATATT
ATGATCGAGTATCATAGCAACAGACGCCTCGTCGCAACGCATACATCTGT
GAATATATCCTAGAACANCGCACACGATATAGTGGAAGCTACANACTGCA
GCTCAACATGAAGATACGCACTATAGTTTACGAGAGAGTAGGANTTATNA
NAAGTGAGNAANGCGCGCATAGGTGATAGGCGTTATATACGNCGNCAGAT
AGTAGTCGATGATGATGTATCTCTATATACACACATCGAGATATTCGAAC
AATGTAATAGACTANCGCCGGCATAACTGTGATGCGCTACATATATCATC
ATTATAATCACCACGCGCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_f13.b1 MSMg01no465_f13.b1 CHROMAT_FILE:
MSMg01no465_f13.b1 PHD_FILE: MSMg01no465_f13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:25 2005
         (568 letters)



>mm_chr9_79164398_79165365
          Length = 968

 Score =  967 bits (500), Expect = 0.0
 Identities = 548/568 (96%), Gaps = 8/568 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   acacacacacacacacagcacacacacacacacacacacactcacacacacagagagaga 60
           ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
Sbjct: 209 acacacacacacacacagcacacacacacacacacacacacacacacacacacaga---- 264

                                                                       
Query: 61  gagagagagagagagagagagagagagagagagagagagagaaatgttagtcatcatttt 120
              | ||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 265 ---a-agagacagagagagagagagagagagagagagagacaagtgttagtcatcatttt 320

                                                                       
Query: 121 ttaaaacttggtctttttttattgctagctacttttcctcttctgctggcctgcatacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaaacttggtctttttttattgctagctacttttcctcttctgctggcctgcatacac 380

                                                                       
Query: 181 tgagttctagatcgctgtctattttaatcataagtgtgtccccagcacctagtagggtat 240
           ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 tgagttctagatcactgtctattttaatcacaagtgtgtccccagcacctagtagggtat 440

                                                                       
Query: 241 ttggttttagaagatgctcagtaaattctgagcaagtcaattaaatgaaaagcagatgag 300
             ||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 441 caggttcaagaagatgctcagtaaattctgagcaattcaattaaatgaaaagcagatgag 500

                                                                       
Query: 301 caatattctcaagctctgaagcagcttttggttgtgggtgaaatcagtggtacaagtttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caatattctcaagctctgaagcagcttttggttgtgggtgaaatcagtggtacaagtttt 560

                                                                       
Query: 361 tcatattaccaaggacagaatcagcgtaaggaatgatgctgttgaaagtaacatactttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatattaccaaggacagaatcagcgtaaggaatgatgctgttgaaagtaacatactttc 620

                                                                       
Query: 421 ctaactgcatcagttgcgtgtaaaagcaataaacaattctcaagaaaaatccagagcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctaactgcatcagttgcgtgtaaaagcaataaacaattctcaagaaaaatccagagcaaa 680

                                                                       
Query: 481 tacttcggttgtccaagtatggggaggagctgcccagcagagttttaggggagagtggtg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tacttcggttgtccaagtatggggaggagctgcccagcagagttttaggggagagtggtg 740

                                       
Query: 541 actgtctttttccaccaagagtgagcca 568
           ||||||||||||||||||||||||||||
Sbjct: 741 actgtctttttccaccaagagtgagcca 768


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 103
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 568
Length of database: 968
Length adjustment: 10
Effective length of query: 558
Effective length of database: 958
Effective search space:   534564
Effective search space used:   534564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)