BAC Information

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BAC

Clone NameMSMg01-465F15
Chromosome9 (Build37)
Map Location 23,242,008 - 23,242,534
singlet/doubletsinglet
Overlap geneBmper
Upstream gene9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
Downstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1, Dpy19l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-465F15.T7 (MSMg01no465_f15.b1)MSMg01-465F15.TJ (MSMg01no465_f15.g1)
ACCAG549552AG549553
length779763
length of high quality
(start - end)
549 (34 - 582)528 (65 - 592)
definitionCHROMAT_FILE: MSMg01no465_f15.b1 PHD_FILE: MSMg01no465_f15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:25 2005CHROMAT_FILE: MSMg01no465_f15.g1 PHD_FILE: MSMg01no465_f15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:40:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGTCGCTATACGACTCACTATTCCCAGAGGAGCCGCGGAATTCTCACCT
TTTCCATACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATCCTT
AATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGT
GGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCT
TGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGGACA
TAGTACTACTTTAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAA
GATGCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCT
GGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAGAAACTCACACA
ATATGTACTCACTGATAAGTGGATATTAGNCCCAAACCTAGGATACCCAG
ATATAAGATATAATTTTCTAACACATGAAACTCCAGAAGAATGAAGACTG
AAGGGGGGACCCTATGCCCCCCCCTTAAATTGGGGACCAAACACCCCCTG
GAAAGAAGTACGAAAGACAAGTTTGGAAC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGTTATAACCTGGATTTGCAAGATTTTACAGCGAC
TTAAGAACACCAGTGAGAGGCCTGTGCTGATTATGTGTCTGTCAGAGAAG
TTGCTGGGTAAATGGAGATGTTCACCCTGATTATTCTCAATGCACGGGAC
TTCCGTGGGAGCTTACACTTCCTACTGTACTGCTGTGTCCCTGGCTCAGT
TAGGAATGGCTTTGTGTGTAAGCTGAGTTTAGTCTGAGAGGCATGTTATA
GAAGGACTGTTAAACACTGTCATGAATTGTTCCCGGAGTGAAAAAAAAAT
CACCTTATCCCAGGAGCTTCTGGGCTGATTCCTTTGTAGTTCTGCTTTTA
GGTCCATGTTCTTTAGTGTCACCTCTTGGTCACTAAGCTTGCAGGGGAAG
GGCTTGTCTGAAGGAATGTTTAAAAACATCATATGTTGAGTGAAGCCTCA
ATCTATCACATTGAAATGTGCTCGGTATCGACTCCCTGATCGCTGACTCC
CAGAGAAGAGTGACTACTGCACAATTTTAAATTTCCCTTCGGNCTTGCCT
TTAACCTTTAGCAGGAGTCTTGATTAGAAGACTTTTCTGACTTCCATAGT
TTCCATCTGTCCTTTAAAAAAAAAAAAAACCAGATGTCTACTGCCCACCC
AGTTTTACAATTCTTTTTACTAATCCCAAGGGTCCAAGATGTTGCTATTT
AAAAATTTCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no465_f15.g1 MSMg01no465_f15.g1 CHROMAT_FILE:
MSMg01no465_f15.g1 PHD_FILE: MSMg01no465_f15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:40:25 2005
         (528 letters)



>mm_chr9_23241808_23242734
          Length = 927

 Score =  944 bits (488), Expect = 0.0
 Identities = 518/528 (98%), Gaps = 1/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggttataacctggatttgcaagattttacagcgacttaagaacaccagtgagaggcctg 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 aggttataacctggatttgcaagattttacaacgacttaagaacaccagtgagaggcctg 260

                                                                       
Query: 61  tgctgattatgtgtctgtcagagaagttgctgggtaaatggagatgttcaccctgattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgctgattatgtgtctgtcagagaagttgctgggtaaatggagatgttcaccctgattat 320

                                                                       
Query: 121 tctcaatgcacgggacttccgtgggagcttacacttcctactgtactgctgtgtccctgg 180
           ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 tctcaatgcacaggacttccgtgggagcttacacttcctactgtaccgctgtgtccctgg 380

                                                                       
Query: 181 ctcagttaggaatggctttgtgtgtaagctgagtttagtctgagaggcatgttatagaag 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 ctcagttaggaatggctttgtgtgtaagctgagttaagtctgagaggcatgttatagaag 440

                                                                       
Query: 241 gactgttaaacactgtcatgaattgttcccggagtgaaaaaaaaatcaccttatcccagg 300
           |||||  ||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 441 gactgggaaacactgtcatgaattgttcccggagtgaaaaaaaa-tccccttatcccagg 499

                                                                       
Query: 301 agcttctgggctgattcctttgtagttctgcttttaggtccatgttctttagtgtcacct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 agcttctgggctgattcctttgtagttctgcttttaggtccatgttctttagtgtcacct 559

                                                                       
Query: 361 cttggtcactaagcttgcaggggaagggcttgtctgaaggaatgtttaaaaacatcatat 420
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 cttggtcactaagcttgcaggggaagtgcttgtctgaaggaatgtttaaaaacatcatat 619

                                                                       
Query: 421 gttgagtgaagcctcaatctatcacattgaaatgtgctcggtatcgactccctgatcgct 480
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 620 gttgagtgaagcctcaatctatcacattgaaatgtgctcggtattgactccctgatcgct 679

                                                           
Query: 481 gactcccagagaagagtgactactgcacaattttaaatttcccttcgg 528
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gactcccagagaagagtgactactgcacaattttaaatttcccttcgg 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 927
Length adjustment: 10
Effective length of query: 518
Effective length of database: 917
Effective search space:   475006
Effective search space used:   475006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)