BAC Information

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BAC

Clone NameMSMg01-466E11
Chromosome9 (Build37)
Map Location 77,299,745 - 77,300,109
singlet/doubletsinglet
Overlap geneLrrc1
Upstream geneC530008M07Rik, Tinag, LOC436082, 2310046A06Rik, 5730403I07Rik
Downstream geneKlhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466E11.T7 (MSMg01no466_e11.b1)MSMg01-466E11.TJ (MSMg01no466_e11.g1)
ACCAG550262AG550263
length1,665772
length of high quality
(start - end)
---365 (87 - 451)
definitionCHROMAT_FILE: MSMg01no466_e11.b1 PHD_FILE: MSMg01no466_e11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:42 2005CHROMAT_FILE: MSMg01no466_e11.g1 PHD_FILE: MSMg01no466_e11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCGTTCTTTCCCTCGTCTCACTNNATATATGATGCGGAAGAGCTGCAG
CAAATCGATAGTCGGCNAGGAGAACTCTCTCTCTTCTCTGCACACAGAGC
AGCGCCGNCTGCGGCATAGTCGTCTCCGCTCTCTCTTTCCTCTCTCGCTA
CACGCATCACTCTATCGATTCATCTGTCTAACTCATTCACGTCATTACCT
CATATATAACGATTCTGTGGTCGCACGCACGCTACTTATCGCTCTCCCGC
GCAGCTCCACAGTCGTAGTTGCAACATGACGAATGTATATAGTGAGTAGT
CGTGCANGCATAATAGATTGACGAAATAGTAATTAAGGATTAGTTATATT
ACCTGTAAGTTATATGATAATCAACTGATANTCATTCGATCATTCTCTTN
ACNCACACTGAACTCTACCTAGTATCGCTCATTGATGTATGTATGACGCA
GCGAGGNTAACACAGTATGATCAACGAGAGACGCGTCTACTACAATAGAA
CTCACTTGAATAGCGCATATCTCGATGAGATGCTGTAGTTACGGGTACCG
ANTATATTTACACAGATGATCGACGTATGTAGNCGGCATATCTCATATGA
ACGTGCGATGTATGGTGACATTGACAGTCACACATATCATCGATTCATCA
TAGATCAGCAGCACATATTGTTACGTCATCGGCAGCTGGCTTAGCGATAT
GCCACGANTGACACGACATAGCACGAGTGACTAATGCAGAAGGGTGTGGC
AGCGTAATCGATCTGCTGCGTGTGCTATATACATGTCGTGGTCTTATTAT
GATACGATCGTAGTTGCGTCGTGTATGCGCTATCTGCGCTAGCGCGATGC
GTGCTCTCCATCATCAACACGACGCTATCACGCTCATGTACGCGCACGCG
CTAGATGTACTGTAGTAGGCCGCAGCGCGCTGTGCTTCATCGTGTATGAG
AGNATGTGACCAGTCCGCGATTGCTCTGTGTATACATACTACTCNAACAC
ATCGGGCGCACTCTGACGCATCGACTGATAGTATGTCATCCACACGACCG
CTGATATACACTCATCGCTCCTCTCTGGCAGCTGCCTATTTTNATCTATT
GCTCACACTCACGCCATGACATATTCACACCTCAATATATACTGCAGTAA
CACTATATCTCACGTGGAAGTAACTACATTTCGACTCTAGGTCGACTTAT
GCTCTTATATGTATCCGTCACGCTGCATCACTAACGATGATCTGGTCNAC
ACACATAGCTAGTACACGANGCTGTCACTACTGTAGTGCTCTCTGCGCAG
ATGTACTCGCGGATGATTNCATATACGTGACAACGTACACAATGTCACGA
TGACACTATATACTCTCATCTCGTACGCGTCAGTGATGCTTACGTACCGT
AGTCTGCGCGCNTACTATCATCGATGCTCGTGATTTATATCGATACGATC
GATGACCNTACGACACTTGCTNTCTGAGTGAGATTTGTGTGTATGCTNCA
CCCTATTGCCTATACATCGTGTACACACCCTCCCACTGCACGCCATCTTC
ATGTGATATATGTTTATCGTGCTACGCCGCTGCGCGANCGCNCACCGGAC
TCTCGAGTATNATCGCTCACACTTGATACGACCTCGCGGCCCTGTATCGT
CTGAGTTNGATCACN
NTAAAAATCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAAGGCAGGATCGT
CAGGGAATTTCTGCCAGGTCTAAGTTCTCACTCTTCTTAGGCTGTCTCTC
ACTGCTCTTTCTACCCAAGGAGAAATAATTCACTTAACAACACAGAGAAT
GGGGAAGCAAGAGAGAAGAAAAGAAGGAAAGGCAGAGGAAAGAAGCATGA
CTAAGGGGACAGTGAAGAGAGCACACAAGACGACTGCAGTACAGGAAAAG
GAGGCAAACAGAGGACCTGGCAGATTTTTCAAAGGGAGGGCAGGAAGGGA
GCAGACAGCAGAGACTGGCTGCCACTCTGCTAACCCACCCCGGGCAGCTG
GTGCGTGCACTCCACCCCTGGCAGGCAGAGGAAGCCTAGTCAAAGTGTGA
GTCTGGTTGGTTGTCTCCTGCCCCTTATTCTTAAGTGGGAGCTAGCAGCA
ATTTCATTTCACTCTTTCAGACCCCTTTTTCCTCCTGATCACGCGTCGTT
TGTCTATGCGCCCCTTTCGTCCTTAGATTTTTCCTATGCAGGATTGTAAA
TTTATTCTTACGATAAAACTTTCTACTTTGCCGGTCGGTAGTGCCGCCCC
GATGAAGCCTTTCTCCTCATTAGTTTTTAGTGACCCCCGCCTCTCCTCCT
TTCTCCTCTCCCTGTCCCCGCTTTTGTCCCTCCCCTTTATGTCTTCCACC
CTAGTCCTTTTTATATCCTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_e11.g1 MSMg01no466_e11.g1 CHROMAT_FILE:
MSMg01no466_e11.g1 PHD_FILE: MSMg01no466_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:42 2005
         (365 letters)



>mm_chr9_77299545_77300309
          Length = 765

 Score =  646 bits (334), Expect = 0.0
 Identities = 357/370 (96%), Gaps = 10/370 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   taaggcaggatcgtcagggaatttctgccaggtctaagttctcactcttcttaggctgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taaggcaggatcgtcagggaatttctgccaggtctaagttctcactcttcttaggctgtc 260

                                                                       
Query: 61  tctcactgctctttctacccaaggagaaataattcacttaacaacacagagaatggggaa 120
           ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 tctcactgctctttccacccaaggagaaataattcacttaacaacacagagaatggggga 320

                                                                       
Query: 121 gcaagagagaagaaaagaaggaaaggcagaggaaagaagcatgactaaggggacagtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcaagagagaagaaaagaaggaaaggcagaggaaagaagcatgactaaggggacagtgaa 380

                                                                       
Query: 181 gagagcacacaagacgactgcagtacaggaaaaggaggcaaacagaggacctggcagatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 gagagcacacaagacgactgcagtacaggaaaaggaggcaaacagaggacctggcaga-- 438

                                                                       
Query: 241 tttcaaag-----ggagggcaggaagggagcagacagcagagactggctgccactctgct 295
              |||||     |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ---caaagcaaagggagggcaggaagggagcagacagcagagactggctgccactctgct 495

                                                                       
Query: 296 aacccaccccgggcagctggtgcgtgcactccacccctggcaggcagaggaagcctagtc 355
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 496 aacccaccccgggcagctggtgcgtgcactccacccctggcagggagaggaagcctagtc 555

                     
Query: 356 aaagtgtgag 365
           ||||||||||
Sbjct: 556 aaagtgtgag 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)