BAC Information

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BAC

Clone NameMSMg01-466G10
Chromosome9 (Build37)
Map Location 42,756,925 - 42,757,362
singlet/doubletsinglet
Overlap genenone
Upstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4
Downstream geneArhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466G10.T7 (MSMg01no466_g10.b1)MSMg01-466G10.TJ (MSMg01no466_g10.g1)
ACCAG550356AG550357
length7491,161
length of high quality
(start - end)
430 (76 - 505)---
definitionCHROMAT_FILE: MSMg01no466_g10.b1 PHD_FILE: MSMg01no466_g10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005CHROMAT_FILE: MSMg01no466_g10.g1 PHD_FILE: MSMg01no466_g10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:41:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTCTAAAATTGCGGCCGCAAAACGAGGCACAATTGCGACACGAGC
CGCGGAANNCTTCCTTTCGGACATGGAGAGATGCGTTCTGACAGGGTCGA
CAGAAGATACTGCAATATGGATGTATAATCAGGCTCTTGCTTCCTTCAAC
TTCAAGGTTCTTCAATGTGAACAACGCCAAGTCTAGATTTTGCAAAGAGA
TCAAATTTAGTGTGTACCCATCATGTCATGATTGCTGGGTAGATAATTTT
TATCTGACTCTGGCCCATTCTAATGTGCCAGAATTGTGTTCCCTTATTCT
ATACAGCTTATATTCTTTGTGAACTTGTGACAACCCTTTTCAGGGATCTT
GGGGGAAAGAGACTGCAGGTATATGTGATGGTGTAGGAGCAGCGCCGCCC
CCGCCCCGCCCTCAGCAAGATTCAGATCACCCCTGGCGCAGCGCAGCTGT
AGCTCAAGCAAAGACCAGGTAACAGCTTGTGCTGAGCAACTCTCCAGAGA
TGGTTGATAATCAGGATCAGCAATGGACATCACTCATCCATGATTGGATG
ACTCCAGGCAAAGGTGACAGCTCCCAGATACAGACAAGAAGATCCTCCCT
AGCAAGAAACAGAATCAAGAACCCCCTCACCACTATCCCATGTGCAATCT
GTCCTTGCTGTAAACTTTTGTCACTCTAATTTGCCTTCTCTCTCTGTTTG
AAAAATTGTCTGTTATCTTCCGTCCCAAATAGAGCCTCTCTCTTATTTT
TTTATTTCTAATGTCAGCCGGAGACCGGCCTGCGCGTGTCGGCAGGTTTT
CTTCAACAGTGGAGGGGTGAGGCGTAGTAGATTTTCTCTCGCAGCGCAGA
GCAGCCACGGTGTCCAGGTTGTTTCGTAACCCCAGCAGCCCTCGCCGTTG
GCTGGTTGGACATCGCGTGAGTCTAGTTGTGGAGCTACAGAGGATGTCTG
CTCCAGGACGGATTTGGACTCCACTCTTAGACCCCCACGATAGCCAGGGC
TCATCATGTCTTTCGCGTTCAAGAGACCGTAATTGGGCTTATTCTACTGG
TCCATCTAGCCACGGCCACCCGAATTCTCAGCGGCGCCAGTAATACGCAA
TAGCAATATCAATAACATATCACATATATAGTTTCTATTCTGCCTTCCAT
ACTTCTCCTCCTCCGAGTGGTAACTACTGTTTGTTTTTGGCCAGCAGATT
GTAGCTGGGTAGGGTTGCTCACAGTATCGTGGCCGTGTGTTGCGCTTTTG
TTCTCCCTCAGGCTTCCTTGGAGCGCGCATCACTTCCCAGAGCCTAGTCA
ACTCTTGCATTGGTTGTTGAAATTATATATGTGTGTGGTTTAGTGCTTGG
TGTCTTGGTTTGTCTCTCGTTTGTTGCCAGGTGGTGTTTGCCGTCTTCTC
TTCAGTTGAGCTAAGTTGTATATTTAAAGTATATTGATTTATATGCTTCT
CCTGATGTCGCTTGATATTACTCTCTACCTCTCTCATGTCTTATTCATCT
GATTCGCGGCTTCGCGTGATATATATGTCCGCCCTGCATTCCTCTTATAT
TATATGTGTCGTTTGTTATTGTGATATTTGGATTGCGACGTTCGCTTATC
ATTCTCAGTCGCATCATCTTATACACATTTCCTGCATACTTCTCTCTCTC
TTATCTCGCTCTTTCTTTTCGCGCCCTCTTTTCTTTCTCTTCCTCGCTCT
CTATTCTACCTCGCTTACCCCTCGTATATGTATATAAATCGCCGCGACCG
CCTGTGGTCATCCTTCTCGTATATGTATGTGTTCTTGCTGTTCTCGCCGT
CGCCTCCTCTACTACTCACCTCTGCCTGCGGCACGCTCGTGTGGTTAGTC
CGTTGCATATGCGTTACTCGTTCGCGCGGGTAGTCTCCGCTCTCTACTCT
AATCGTCACGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_g10.b1 MSMg01no466_g10.b1 CHROMAT_FILE:
MSMg01no466_g10.b1 PHD_FILE: MSMg01no466_g10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:41:52 2005
         (430 letters)



>mm_chr9_42756830_42757660
          Length = 831

 Score =  754 bits (390), Expect = 0.0
 Identities = 423/438 (96%), Gaps = 8/438 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagagatgcgttctgacagggtcgacagaagatactgcaatatggatgtataatcaggct 60
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 533 gagagatgcgttctgacagggtcgacagaagatactgcagtatggatgcataatcaggct 474

                                                                       
Query: 61  cttgcttccttcaacttcaaggttcttcaatgtgaacaacgccaagtctagattttgcaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 473 cttgcttccttcaacttcaaggttcttcagtgtgaacaacgccaagtctagattttgcaa 414

                                                                       
Query: 121 agagatcaaatttagtgtgtacccatcatgtcatgattgctgggtagataatttttatct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agagatcaaatttagtgtgtacccatcatgtcatgattgctgggtagataatttttatct 354

                                                                       
Query: 181 gactctggcccattctaatgtgccagaattgtgttcccttattctatacagcttatattc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gactctggcccattctaatgtgccagaattgtgttcccttattctatacagcttatattc 294

                                                                       
Query: 241 tttgtgaacttgtgacaacccttttcagggatcttgggggaaagagactgcaggtatatg 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 tctgtgaacttgtgacaacccttttcagggatcttgggggaaagagactgcaggtatatg 234

                                                                       
Query: 301 tgatggtgtaggagcagcgccgcc--cccgccccgccctc------agcaagattcagat 352
           ||||||||||||||||||||||||  ||| |||| |||||      ||||||||||||||
Sbjct: 233 tgatggtgtaggagcagcgccgccaccccccccccccctcgtcctcagcaagattcagat 174

                                                                       
Query: 353 cacccctggcgcagcgcagctgtagctcaagcaaagaccaggtaacagcttgtgctgagc 412
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 173 cacccctggcgcagcgcagctgtagctcaagcaaagaccagggaacagcttgtgctgagc 114

                             
Query: 413 aactctccagagatggtt 430
           ||||||||||||||||||
Sbjct: 113 aactctccagagatggtt 96


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 430
Length of database: 831
Length adjustment: 9
Effective length of query: 421
Effective length of database: 822
Effective search space:   346062
Effective search space used:   346062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)