BAC Information

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BAC

Clone NameMSMg01-466I04
Chromosome9 (Build37)
Map Location 39,312,943 - 39,313,357
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr908, Olfr909, Olfr910, Olfr912, Olfr913, Olfr914, Olfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44
Downstream geneOlfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960, Olfr961, GA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466I04.T7 (MSMg01no466_i04.b1)MSMg01-466I04.TJ (MSMg01no466_i04.g1)
ACCAG550440AG550441
length772789
length of high quality
(start - end)
450 (43 - 492)414 (78 - 491)
definitionCHROMAT_FILE: MSMg01no466_i04.b1 PHD_FILE: MSMg01no466_i04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:01 2005CHROMAT_FILE: MSMg01no466_i04.g1 PHD_FILE: MSMg01no466_i04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCG
CGGAATTCTCAACTTTTCCATACCAAATGGCTGAGAAGTACCTAAAGAAA
TGTTCAACATCCTTAGTCACCAGAGAAATGCACATTAAAATGATCCTGAG
ATTCTACCTCACACCAATCAGAACAGGTTAGGTCAAAAACTCAGGTGACA
GCAGATGCTGGCAAGGTTGCAGAGAAAGAGGGAAACTCCTCCACTGCTTG
TAGGATTACACGCTGGTACAACCACTCTGGAAATCAGTTTGGTGGTTCCT
CAGAAAACTGGACATAGTACTACCTGAGGATGCAGCAATACCACTCCTGG
ACATAAACCCAAAATATGCTCCAACATGTAATAAGGACACTTACTCCACT
ATGTTCATAGCAACCTTATTTATAATATCCAGGAGCTAGAAAGAACCCAG
ATGTCCCACAACAGTGGAATGAATACAGAAAATGTGATACGTTTACCCAG
TGGAGTACTAATCAGCTATTAACAACAATGAATTTATGACATTCTTTGGC
AAATGGATGGATCTGGAGGATATCATCCCGAATGAGGTAATGAAATTCTC
CAAAGACCCCTCCTTGATTTGCTCTTCTTTGCATTTTGTGATTTTATTCT
CTTAATCTCTCAACACTTCTCCATTTCTAATTTCCCTAACCTCTTGTTCC
CTTTTACAAAGCCATACCCCCTTTGTTGCCCTATTTTTTTTTTTATTTCT
TAAATAACCCCCTCCTTTTACC
NACAATGATAGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAAGATATACCAGAGACATAGACA
TACAAAATATCTGAAAATTACTAACATTTATGAACTATCAGGATCAGTGA
ATACTTACTTGATTTTCAAAACTTGAGTCAGACATTTACATTCCTGTGTT
TAAGAGGTGTGGGGCACAGAAACAAATTTTCCTAAGAAAACAGAAAATGC
TAGTTGATATGAGATTGAAAACTGCTTAGTCTAAACTGAAAGTGGAAAAG
ATACTACAGAGTTTATATTCTTTTTCATCTACTGTTATGCTTCTGAAAAA
TACTAGTAGAGTGTTTAGAGAGACTGTAGTCTACAATTTGTTACTGTAGA
GTGGGAGAGATTCTTGTTGATAATGAAACCGGAAATTTATCCTTATTATT
TCAAGTAATTGTGGTTTCCTCCTTTAGAAATATTTATAGTGAAGCTAACA
TTTATTGAGCAAAGTATCATATCAAAATACAGGACCATAAATTTCATGCG
CGTCTATTTTTGTTTGCTTTGCGATGCGACATCCTTTCCTCCTTGCTTTA
TAAATAGGCGTTACCTTTCTTTTACACTGTTTTACTGCCTTCTTATGCAA
TGAACGTCATATTTTTTTTCTCCCCCTTGGTCGTCCACACTGGCCATCTA
CTGGCCTAACAAATAACTTCCTTTGTGCCCCACACCCATATATTCTCCTT
GTCATCGTTTTTTTTCTTCCCTCCTCCTAAATTCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_i04.g1 MSMg01no466_i04.g1 CHROMAT_FILE:
MSMg01no466_i04.g1 PHD_FILE: MSMg01no466_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:01 2005
         (414 letters)



>mm_chr9_39312743_39313557
          Length = 815

 Score =  704 bits (364), Expect = 0.0
 Identities = 403/416 (96%), Gaps = 3/416 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aagatataccagagacatagacatacaaaatatctgaaaattactaacatttatgaacta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 aagatataccagagacatagacatacaaaatatctgaaaattactaacatttatgaacta 556

                                                                       
Query: 61  tcaggatcagtgaatacttacttgattttcaaaacttgagtcagacatttacattcctgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcaggatcagtgaatacttacttgattttcaaaacttgagtcagacatttacattcctgt 496

                                                                       
Query: 121 gtttaagaggtgtggggcacag-aaacaaattttcc-taagaaaacagaaaatgctagtt 178
           |||||||||||||||||||||| ||| ||| ||||| |||||||||||||||||| ||||
Sbjct: 495 gtttaagaggtgtggggcacagaaaaaaaaatttccttaagaaaacagaaaatgcaagtt 436

                                                                       
Query: 179 gatatgagattgaaaactgcttagtctaaactgaaagtggaaaagatactacagagttta 238
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 gatacgagattgaaaactgcttagtctaaactgaaagtggaaaagatactacagagttta 376

                                                                       
Query: 239 tattctttttcatctactgttatgcttctgaaaaatactagtagagtgtttagagagact 298
           ||  || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 375 taaactctttcatctactgttatgcttctgaaaaatactagtagagtgtttagagagatt 316

                                                                       
Query: 299 gtagtctacaatttgttactgtagagtgggagagattcttgttgataatgaaaccggaaa 358
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct: 315 gtagtctacaatttgttactgtagagtgggagagattcttg-tgataatgaaaccagaaa 257

                                                                   
Query: 359 tttatccttattatttcaagtaattgtggtttcctcctttagaaatatttatagtg 414
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 256 tttatccttattatttcaagtaattgtggtttcctcctttagaaatagttatagtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 815
Length adjustment: 9
Effective length of query: 405
Effective length of database: 806
Effective search space:   326430
Effective search space used:   326430
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)