BAC Information

Click to search

BAC

Clone NameMSMg01-466L08
Chromosome9 (Build37)
Map Location 45,006,860 - 45,007,028
singlet/doubletsinglet
Overlap geneTmprss4
Upstream geneCbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1, Atp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b
Downstream geneIl10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik, BC033915
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466L08.T7 (MSMg01no466_l08.b1)MSMg01-466L08.TJ (MSMg01no466_l08.g1)
ACCAG550591AG550592
length773761
length of high quality
(start - end)
169 (82 - 250)239 (78 - 316)
definitionCHROMAT_FILE: MSMg01no466_l08.b1 PHD_FILE: MSMg01no466_l08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:18 2005CHROMAT_FILE: MSMg01no466_l08.g1 PHD_FILE: MSMg01no466_l08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTGTTTTCCTCTATAATTTGCGGGCGCCAAACGACGCCTAAATTCCGACA
AGGCGCGGAANNCNAAANTTGGCACCAAAGAGGGCTCCAAGGCCAGAACA
CATAGGGCCTCATAGGTCCTTTTTCAGCCCTCTGTGACTGGGAACTGCTG
GCTGCTGGCTGACTTCTGGCTTGTGGCTTGCACCATCTCTTGTCAGGTGA
GACTGGTCTGAGGCCTGACTCACTCATCGTTCCCTCTCGGAACTTGTTGG
TAGTCTAAGCTGGTCTCATATTCATGGCAGTCCTTCTGCCTCAGCTTCCA
GGATGCTCAGATTACAGGTTTGTGCTTCTATACCTGGCTTGGCTTTACAT
CAGTTTTTTCTCTTTAATGGTCGCATGGCAATATGGATAATTTTTTCCCT
GAGAAGACTGGCTGTGAAACTTTGCCTCAGCCTCCCTGAAGGTTCGTGAC
AATGTTGTCTTGTGCTGTTCTCCCCTCCTCTAATCTTTGGCATCTTACGA
AGGTCCTGAAGTCTTTGCATATACTCTAGCCTTTCCTTCCCCCATCCCCC
TTTGTGCAATATCTTCTCTTCCCTTTTACTTTTGTTGTTTATTTCCCTCT
CCCCGGCTTTTTATTGTTTTTGCTTTTGTTTTCCCTTTTTCTTTTGCCTC
TTTTTTTCTTTTTCTCTCGCCAGCTCCCTACTATCCCCCCGTTTCTCTCT
GCTTCCCCTTTTTTTCCCCCCTTATCCTCCTCGCCGCCTCTATTTACCCG
TTTTTCTTTTTTTCTCCCCCCTT
CCTCCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTACTAGAGGAATTCACTAATTACTGATGGTCTT
GAATAAGTGTCTCAGCTTCTCTAAGCATCAGCTTCCCCGTGTGTTACAAT
AAAATTCATGACATGTATTACTTATTCTGCGGATTTATAAAGATTGATTA
GCATAAATAACATAGCTGCTGCAGTGCCAGGCAATGGCAATTGCACAATA
AATATTTGTTACTTCTATTATGCATAGGGCTGCGACTGTGTGTGTGTGTG
CTTATGTGCATTTAGATGTTTTTTTGGGTGCATATGCACATGCATGCATG
AATGCACATGTAAGTGTGTGTGTGCATGCATGTGACGAGAAGACAAACTT
GAATGTCATTCCCTAGGCACTGCCTGAGATTTTTTTTTTAAAGACAGAGT
CTTTCACTGGCCTGTAGGCCATCAAGTAGGCTAGGCTGGTTGGCCAGAAA
GGACCCAGGATCTGCCTGTCTCTATCTACCCTCTCCACACTGAGAACTAT
CCGCATCCATCATTATGCCTGGATCTTTTTCTTTATCGATGCCCCTCGCT
AATTTAATTTCTTACACTCTTGTGCATCTTTTTCTTTCCACTCTCCTTGT
TTTATCTACCTAATCTCTTACTCTCTCTTATCTTTCAATTCTTTTATTAT
AAAAACAAAAACCCCCCTCTCCACTTCCTTAATACCTCTCTCCTTTCATG
TCCACACTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_l08.b1 MSMg01no466_l08.b1 CHROMAT_FILE:
MSMg01no466_l08.b1 PHD_FILE: MSMg01no466_l08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:18 2005
         (169 letters)



>mm_chr9_45006660_45007228
          Length = 569

 Score =  267 bits (138), Expect = 3e-76
 Identities = 161/174 (92%), Gaps = 10/174 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggctccaaggccagaacacatagggcctcataggtcctttttcagccc-----tctgtg 55
           ||||| ||||||||||||||||| |||||||||||||||||     |||     ||||||
Sbjct: 201 gggctgcaaggccagaacacataaggcctcataggtccttt-----cccaggagtctgtg 255

                                                                       
Query: 56  actgggaactgctggctgctggctgacttctggcttgtggcttgcaccatctcttgtcag 115
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 actgggaactgctggctgctggctgacttctggcttgtggcttgcaccatctcttgtcag 315

                                                                 
Query: 116 gtgagactggtctgaggcctgactcactcatcgttccctctcggaacttgttgg 169
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 316 gtgagactggtctgaggcctgactcactcattgttccctctcggaacttgttgg 369


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)