BAC Information

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BAC

Clone NameMSMg01-466M09
Chromosome9 (Build37)
Map Location 63,667,607 - 63,667,846
singlet/doubletsinglet
Overlap genenone
Upstream geneCln6, Calml4, Pias1, LOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5, 2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009
Downstream geneSmad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1, Uchl4, Tipin, Dis3l, Megf11, Rab11a, AI115600, F730015K02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-466M09.T7 (MSMg01no466_m09.b1)MSMg01-466M09.TJ (MSMg01no466_m09.g1)
ACCAG550641AG550642
length752787
length of high quality
(start - end)
237 (74 - 310)67 (74 - 140)
definitionCHROMAT_FILE: MSMg01no466_m09.b1 PHD_FILE: MSMg01no466_m09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:23 2005CHROMAT_FILE: MSMg01no466_m09.g1 PHD_FILE: MSMg01no466_m09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:42:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCCATCAAAATTTGCGGCCGCTAAAGAACACATTTCAAAACGGAGCGC
NGGAATCACTTTTACACCAAACTGGCCTCGAACTCACGGAGCTCTGCCTG
CCTCTGCCTCTGAGTACAGCCATTAAAGGCGTGCGCCAGCATTTGCCTCA
GCTTTGATTCCTTTACTGTTACATTAGAGTGATGACTTGAGTACAGTCTC
TGGAACCCACAGTGGAAGGAATGAACCAACTCCTAAAAGCTCTCCTCTGG
TTGACATATACCACACAGTGGCATGAACTCATGTATACACACACACACAC
ACACACACACTTACTCATTTGCATATACGCACATATAAATATATATCACA
CCCATATCTGTATATATTATATACACATACACACAGTAGTAAATGTAAAT
CAAACTTTTTTTTATAGAAGTCTCTGATGGAGAGATGAGCACACTCCTGA
AATCTGAGCACTTGGGTGGTAGGGATAGGCTGATCACAGTCCAAGACCAT
TTTTGGCTATGCAGCAAGCTACTGGTCAGCCTGGTGCACATGATACCTTG
TCTCTAAAAAACATAAAACCCCCCCTTGTATGCCTGTTTATGGAAAAAGC
TTTCTTATAAATTGATGGCTAACCTCCCCCCTTTGTCTTGTATTTTTTTT
TTCATCGTTGCCCGTTATCATTTGTTTCTTTCATTTTTGTCCGCCCCCTC
CTCTTATCCCCCTCCCCTCACCCCAATTTTCACTTTAACCCTTATTTATT
TC
AAACCCCCATGCCGTGGGAGGCCTGGCGGCGCCTGGTCCCAACACTAGGT
GAACTATAGAATTGCAGCCCAATCTCAGGTTGGCATATTTCTCCGTACTC
GTCGCTGTGGGCCATTCCCATGGGGGGTGGGGTGGGAGGNNNNNNNNNNG
NNGTAGANGCAGGAAGTGGGGGGGGGCCAGAAAACCCCTCCCCCCCCCCC
CCTCTCCTCCTCCTTCCACCCCCCCCCCTCCGCCCCCCCTCTTTTTTCCT
CCCCCCCCCGCCCTTCCCCCCCGCACCCCCCCCCCCCTCCCCGCCCCCCC
CCCCCCCCCTTTTCCTGGTTCCCCGCCCCCGCCCCCCCCCCATATCCCCC
CTTTCCTCTCCCCCCCCCCCCCTAATTACTCTATTTTCCCCTCTCCCCCC
TCCCCCCCCTCCCCCCCCCCCCCCCCCCCCCCTTTTTCCCCCCCCCTCCC
CCTCCCCCCCCCTTCTCCTCCCCCCCCCCCTCCTCCCCCCCCCTCCCCCC
CCCCCCCCCTCCCCCTTCCCTCCCCCTCCCCCCCCCCCTCTTCTCCCTCC
CCCCCCCCCCCCCCTCCTACGCTCCCCCCTCTTCCCCACGCCCCCCCCCC
CCCCCCCCTCCTCCTCCCCCCCCACCCCCCCCCCCCCCCTTCTCCCTACC
CTCTCCTCCCTCCCCCCATCCCCTCCCTCCCCCTACCATCCCCCTCTCCC
CCCCCCTCCCCCTCCCCCCTCCACCCCCTCCTCCCCTTCCCTCCTCCCCC
TTTCTCCCCCCCCCCTCCCTCGCCCCCCCCCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no466_m09.b1 MSMg01no466_m09.b1 CHROMAT_FILE:
MSMg01no466_m09.b1 PHD_FILE: MSMg01no466_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:42:23 2005
         (237 letters)



>mm_chr9_63667407_63668043
          Length = 637

 Score =  391 bits (202), Expect = e-113
 Identities = 229/240 (95%), Gaps = 4/240 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggcctcgaactcacggagctctgcctgcctctgcctctgagtacagccattaaaggcgtg 60
           ||||||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 ggcctcgaactcaaggagctctgcctgcctctgcctctgagtacagggattaaaggcgtg 260

                                                                       
Query: 61  cgccagcatttgcctcagctttgattcctttactgttacattagagtgatgacttgagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgccagcatttgcctcagctttgattcctttactgttacattagagtgatgacttgagta 320

                                                                       
Query: 121 cagtctctggaacccacagtggaaggaatgaaccaactcctaaaagctctcctctggttg 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 321 cagtctctggaacccacagtggaaggaatgaaccaactcctaagagctctcctctggttg 380

                                                                       
Query: 181 acatataccacacagtggcatgaactcatgtataca----cacacacacacacacacaca 236
           ||| ||||||||||||||||||||||||||||||||    |||||||| ||| |||||||
Sbjct: 381 acacataccacacagtggcatgaactcatgtatacatatacacacacatacatacacaca 440


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)