BAC Information

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BAC

Clone NameMSMg01-467H07
Chromosome9 (Build37)
Map Location 20,593,503 - 20,593,966
singlet/doubletsinglet
Overlap geneCol5a3
Upstream geneOlfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
Downstream geneRdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5, Mrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467H07.T7 (MSMg01no467_h07.b1)MSMg01-467H07.TJ (MSMg01no467_h07.g1)
ACCAG551160AG551161
length745733
length of high quality
(start - end)
186 (128 - 313)464 (68 - 531)
definitionCHROMAT_FILE: MSMg01no467_h07.b1 PHD_FILE: MSMg01no467_h07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:20 2005CHROMAT_FILE: MSMg01no467_h07.g1 PHD_FILE: MSMg01no467_h07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCAAATTTTGCGGCCGCAAANACGAATCACTAAATGCAGAAAAAGGGGCG
GAATTCCTGGNCTTAGCTGAAAATTCGGGAACCAGCATTATGGATTCTAA
TACTGAAGGAGCCTTGTGTATCCCGAGACAACAGAAGACCAAGGCAGGCC
GGGCATGGCGGTACAAGCCTTTAATCCCAGCACTTAGGAGGCAGAGGCAG
ACCAAGGCAGGTGGTTCTTAGTGAGTTCAGGCTACCTTGGTCTACATAGT
GAGTTCCAGGCTACACAGTGCCATAACTCACTGGTGGAGCAGACCCTGGA
GAATGTAATTATTGGTTTATANGTATATAGNTTTGTTGTTGTTGTTGTCG
TCGTCGTCTTTGCACTCGTCATCAGCTTATGTATTTTCAGACATGTATTA
TGTAGCCCAGCCTAGTTTGTCCCTCACTATGTAGCTGATAATAACCATGA
ACCCTGATCTTCTGTCTCTGCCTTTCTCGTGCTACCATGACTGTCTTGTG
TAACTATGCGCTGCTCGCGTACTACTGACGCTGCACTCCAGCGCCTCATG
TTTGTTAGCCATACCTCCCTATCCATTGTTTCCCCACTCTTCCCTGATAT
TATTTCATGATCATTCTCTTGCGACATTCTTATTACACTTCCCTACTTCT
CTCTTTTCTTCAGTTGGTCGGCCCAATTACACCTGGATTCTTCATATTTC
CCCTCCTCCCGCACTTTCTATCCCGAGTACTCCGCGCTTTTATTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTTTCGCGAAATTCCTGAGCACCACACAACACAGGTGTGATGG
CATCTGCCTGTGGTCCCAGCTTCCAAGGTGAAACGCAAGGGTGAGGAGTT
CAAGCTCAGCCTTTTCTACATACCAAGTATGAGGCTAGCCTGGGCTACAT
AAAACCCTATCTTAACAAAAGAACTAGAGGAGCTGGCTGGCAGGTGGATG
TGGCAGCCCACCTGTAATCCCAGCACTCGGAAAGTAGAGCCAGGGAGTCC
CCAAAGGAGCAAACTGTCTAATAACACAACTAGAATTGGTGAGCTCTGGG
TTCAAGTGAAAGATCCTGCCTCCATATATAAGGAAGAAGAGATAGAGGAC
ACTGGACATCAACCTCCAGTTTCCATGCTCCAGTATACTGCACACATGGA
GGCAACTCACATCTAAACGTCAATGAACACACACACAACAAGCAACTCAA
AGGCCACAAAGGGGGGTGGGAATTCATGGCAGGTTGTTAAGTTATTAAGG
TCCTTGAATGGCAATGTGTGCCCCAGGTCTTTTGCCTCTCTCTGTATCTC
CTTTCTCTCTCTCTCACTCTCTCTCTTTCTCTCTCTCTCTCTTTTATTTT
TATTCTTTTATCTTCCTCTCCTCCTATTCTTTCTTTCATCCTCCTTCCCT
TACCCCTTCTTTCTTTCTTCCCTTCTACTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_h07.g1 MSMg01no467_h07.g1 CHROMAT_FILE:
MSMg01no467_h07.g1 PHD_FILE: MSMg01no467_h07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:20 2005
         (464 letters)



>mm_chr9_20593303_20594166
          Length = 864

 Score =  874 bits (452), Expect = 0.0
 Identities = 461/464 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctgagcaccacacaacacaggtgtgatggcatctgcctgtggtcccagcttccaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcctgagcaccacacaacacaggtgtgatggcatctgcctgtggtcccagcttccaag 260

                                                                       
Query: 61  gtgaaacgcaagggtgaggagttcaagctcagccttttctacataccaagtatgaggcta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgaaacgcaagggtgaggagttcaagctcagccttttctacataccaagtatgaggcta 320

                                                                       
Query: 121 gcctgggctacataaaaccctatcttaacaaaagaactagaggagctggctggcaggtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcctgggctacataaaaccctatcttaacaaaagaactagaggagctggctggcaggtgg 380

                                                                       
Query: 181 atgtggcagcccacctgtaatcccagcactcggaaagtagagccagggagtccccaaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgtggcagcccacctgtaatcccagcactcggaaagtagagccagggagtccccaaagg 440

                                                                       
Query: 241 agcaaactgtctaataacacaactagaattggtgagctctgggttcaagtgaaagatcct 300
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaactgactaataaaacaactagaattggtgagctctgggttcaagtgaaagatcct 500

                                                                       
Query: 301 gcctccatatataaggaagaagagatagaggacactggacatcaacctccagtttccatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctccatatataaggaagaagagatagaggacactggacatcaacctccagtttccatg 560

                                                                       
Query: 361 ctccagtatactgcacacatggaggcaactcacatctaaacgtcaatgaacacacacaca 420
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 ctccagtatactgcacacatggaggcaactcacatctaaacgtcaatgcacacacacaca 620

                                                       
Query: 421 acaagcaactcaaaggccacaaaggggggtgggaattcatggca 464
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acaagcaactcaaaggccacaaaggggggtgggaattcatggca 664


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 464
Length of database: 864
Length adjustment: 10
Effective length of query: 454
Effective length of database: 854
Effective search space:   387716
Effective search space used:   387716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)