Query= MSMg01no467_j09.b1 MSMg01no467_j09.b1 CHROMAT_FILE:
MSMg01no467_j09.b1 PHD_FILE: MSMg01no467_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:30 2005
(236 letters)
>mm_chr9_110937976_110938611
Length = 636
Score = 456 bits (236), Expect = e-133
Identities = 236/236 (100%)
Strand = Plus / Minus
Query: 1 acactatctttccaaagaccaaccccaaaatgaggatatgttaagggtgctaaagactgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 acactatctttccaaagaccaaccccaaaatgaggatatgttaagggtgctaaagactgc 377
Query: 61 tcctgaaggaggaagcgaaacatcttcacataccgtcagtattctgcaagacagtggagt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 tcctgaaggaggaagcgaaacatcttcacataccgtcagtattctgcaagacagtggagt 317
Query: 121 ccttcaaaaatgcaacatttcctgccttctcagccagacacctaaaatattttccaaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ccttcaaaaatgcaacatttcctgccttctcagccagacacctaaaatattttccaaaat 257
Query: 181 aaatacaccacaagggagacaccattagaattctcataaatatttgtgacatgcat 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 aaatacaccacaagggagacaccattagaattctcataaatatttgtgacatgcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space: 142329
Effective search space used: 142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no467_j09.g1 MSMg01no467_j09.g1 CHROMAT_FILE:
MSMg01no467_j09.g1 PHD_FILE: MSMg01no467_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:30 2005
(399 letters)
>mm_chr9_110698465_110699263
Length = 799
Score = 617 bits (319), Expect = 0.0
Identities = 387/429 (90%), Gaps = 30/429 (6%)
Strand = Plus / Plus
Query: 1 catgggctttgagtactattggtagctatgacttaagcccagatagggaatgtgcttacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgggctttgagtactattggtagctatgacttaagcccagatagggaatgtgcttacc 260
Query: 61 agaatctcagtttgttggttcaaataggtgtggggtaactcttccagctttccacaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaatctcagtttgttggttcaaataggtgtggggtaactcttccagctttccacaaaat 320
Query: 121 gtcaggagttccttgctgtgctgggcttgtagctcagttggtaagaggacctccctatca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 321 gtcaggagttccttgctgtgctgggcttgtagctcagttggtaagaggacctccctagca 380
Query: 181 tgcacagaaccctgcgtggttttgttttgtttcccccgagacagggtttctctgtgtatt 240
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgcacagaaccttgcatggttttgttttgtttcccccgagacagggtttctctgtgtagc 440
Query: 241 ccttactgtcttagaactctctccatagaccaggctggtcttgaacttaaagagatcctc 300
||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 441 cctaactgtcttagaactctctccatagaccaggctggccttgaacttaaagagatcctc 500
Query: 301 ttgccttctaagtgctgagagtaaaaggatgtgcaaccaccatccaggttttttta---- 356
||||||||||||||||| || ||||||||||||||||||||| ||||||||||||
Sbjct: 501 ttgccttctaagtgctgcgattaaaaggatgtgcaaccaccacccaggtttttttttttt 560
Query: 357 --------------------------aaggtttatttatatctaagtacactgtagctgt 390
|||||||||||||||| |||||||||||||||||
Sbjct: 561 ttttttttttttttttttttttttttaaggtttatttatatccaagtacactgtagctgt 620
Query: 391 cttcagaca 399
|||||||||
Sbjct: 621 cttcagaca 629
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 799
Length adjustment: 9
Effective length of query: 390
Effective length of database: 790
Effective search space: 308100
Effective search space used: 308100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
