BAC Information

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BAC

Clone NameMSMg01-467K10
Chromosome9 (Build37)
Map Location 56,738,019 - 56,888,746
singlet/doubletdoublet
Overlap geneCspg4, Sh3px3, Imp3, Snupn, Ptpn9
Upstream geneZfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1
Downstream gene2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603, Rpp25, Cox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-467K10.T7 (MSMg01no467_k10.b1)MSMg01-467K10.TJ (MSMg01no467_k10.g1)
ACCAG551308AG551309
length753766
length of high quality
(start - end)
189 (119 - 307)243 (68 - 310)
definitionCHROMAT_FILE: MSMg01no467_k10.b1 PHD_FILE: MSMg01no467_k10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:35 2005CHROMAT_FILE: MSMg01no467_k10.g1 PHD_FILE: MSMg01no467_k10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:43:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,888,558 - 56,888,746)(56,738,019 - 56,738,260)
sequence
TCATTCGTGGCGCTAAAAGAGTCACTATTTTACAAAAACTCCGCGGAATC
ACTTTGTTCACACCATAGGCTCAAACTCACAGAGATCTGCTTGCCTCTGC
CTCCTGGGTACTAGGATTAAAGCAGTGAACCACACCACACTTCACTTAAC
TACACTGTCTTTAAAAATAAAAAATAAAAAAAATTGAGGGGAGCGTTGAA
CAATTGGAACTCTGATATTTACTTCACAATCCAGAATTCCAAGAGAGATA
CAGTTTGCTCTCTGTAGGCAGTCTTACTAGACCCTGGTTGAAGAAGGGAA
GACCAGGAGCTATTTTTGCTCACGGTTCTAGATCATCAAGCAAGAGCTCC
TCAGTTCAATCAAAGGCACAACCATGAAGTCCTCTCAATTCTAAAATAGC
AGTAGATTGAAATGCTACAAGCAAGACAACCTCGCTCTTTCAAGATGATT
GCTTGGAGGCAACGAGTAACTACAGGAGCACCCATATCACAATCTTTAAA
GCTCCCAAAAGTGGTATCCTTTTTTGTTCCCCACCTATTTCCTTTAATTC
CCAACTGTAGAAATTGTATAATAATGTTTGCTAACCTGTAAATTCCCTCC
CAACCTGAATTTAACACACCTAACATAATTCTTATTTCCAAAACCCCCCT
CTTTGGTTTCCCTTCGTTCCGCTTCAAACTATGTCCACCCTGGTCCTCTA
CACATCAACTCTCTTATTGCTCCTTACCATTATAATCCACTCTCTTATCT
TTG
TGATAGGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTTTCAGAAATTCAGGCCGGGTTCTCTACCTGCACTCTCGCCCTG
GAGCCTGGAGTGATTCCTTCTCCCTGGATGTGGCCTCGGGCCTGGGTGAT
CCTCTTGAAGGCATCTCTGTGGAGCTGGAGGTGCTGCCCACAGTCATCCC
CCTGGATGTTCAAAACTTCAGCGTCCCCGAGGGCGGCACCCGGACGCTGG
CCCCTCCTCTGGTCCAAATCACTGGGCCTTACTTCCCCACGCTGCCAGGC
CTTGTCCTGTTTTTGTTAGAGCCACCGCAGCACGGGGCCCTACAGAAGGA
GTATCATTCTCAAGATGGGAGCCTCAGCACCTTCTCCTGGAGAGAGGTAC
CGGAGACGCCTGCGCCTCCTCGGCTCTAGTCACTGGCACTGCTTTATGCT
TTATTTCAGTCTTCCCCTGGGAAATGGAAACGTTGCTGTTTACCTTCTCT
CCCCCCCTTTTTTCTCTTTTTCCTCTTTTTCCCTTTTCTTCCCTCTCTTT
CTCTTTCTTTACATTGTTATCATAACTCTTCCCTTGCCTTTATTTCTCCC
CTCTCTCAAAACTATCTTTCCTTCACTTCCTTTTTCCCCCTGGTTTTCTC
CCCTTTTTTCTTTTTTGTATGTATCGGGATATCCTCTACTCTTCTTTGTC
TTTTTTTCCTTTCCCATTCCTATACGTNCTTCATTTTTTCTTTATCTTCC
CTTCCCTCTTCTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no467_k10.b1 MSMg01no467_k10.b1 CHROMAT_FILE:
MSMg01no467_k10.b1 PHD_FILE: MSMg01no467_k10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:35 2005
         (189 letters)



>mm_chr9_56888291_56888879
          Length = 589

 Score =  358 bits (185), Expect = e-103
 Identities = 188/189 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagcagtgaaccacaccacacttcacttaactacactgtctttaaaaataaaaaataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aaagcagtgaaccacaccacacttcacttaactacactgtctttaaaaataaaaaataaa 397

                                                                       
Query: 61  aaaaattgaggggagcgttgaacaattggaactctgatatttacttcacaatccagaatt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 396 aaaaattgaggggagcgttgaacaattgaaactctgatatttacttcacaatccagaatt 337

                                                                       
Query: 121 ccaagagagatacagtttgctctctgtaggcagtcttactagaccctggttgaagaaggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ccaagagagatacagtttgctctctgtaggcagtcttactagaccctggttgaagaaggg 277

                    
Query: 181 aagaccagg 189
           |||||||||
Sbjct: 276 aagaccagg 268


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no467_k10.g1 MSMg01no467_k10.g1 CHROMAT_FILE:
MSMg01no467_k10.g1 PHD_FILE: MSMg01no467_k10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:43:35 2005
         (243 letters)



>mm_chr9_56737819_56738461
          Length = 643

 Score =  453 bits (234), Expect = e-132
 Identities = 240/242 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccgggttctctacctgcactctcgccctggagcctggagtgattccttctccctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggccgggttctctacctgcactctcgccctggagcctggagtgattccttctccctgg 260

                                                                       
Query: 61  atgtggcctcgggcctgggtgatcctcttgaaggcatctctgtggagctggaggtgctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtggcctcgggcctgggtgatcctcttgaaggcatctctgtggagctggaggtgctgc 320

                                                                       
Query: 121 ccacagtcatccccctggatgttcaaaacttcagcgtccccgagggcggcacccggacgc 180
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 321 ccacagtcatccccctggatgttcaaaacttcagcgttcccgagggcggcacccggacgc 380

                                                                       
Query: 181 tggcccctcctctggtccaaatcactgggccttacttccccacgctgccaggccttgtcc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tggcccctcctctggtccagatcactgggccttacttccccacgctgccaggccttgtcc 440

             
Query: 241 tg 242
           ||
Sbjct: 441 tg 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)