BAC Information

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BAC

Clone NameMSMg01-468H21
Chromosome9 (Build37)
Map Location 61,059,406 - 61,273,101
singlet/doubletdoublet
Overlap geneLOC100040481, Tle3
Upstream geneThsd4, LOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
Downstream geneLOC100039851, Rplp1, Kif23, Paqr5, Glce, Spesp1, LOC100039897, Anp32a, Coro2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468H21.T7 (MSMg01no468_h21.b1)MSMg01-468H21.TJ (MSMg01no468_h21.g1)
ACCAG551951AG551952
length771811
length of high quality
(start - end)
143 (366 - 508)332 (76 - 407)
definitionCHROMAT_FILE: MSMg01no468_h21.b1 PHD_FILE: MSMg01no468_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:43 2005CHROMAT_FILE: MSMg01no468_h21.g1 PHD_FILE: MSMg01no468_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:43 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,272,959 - 61,273,101)(61,059,406 - 61,059,735)
sequence
CCCCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGAT
CCGCGGAATTCTTTCCTCTTACGATCAGGGTGTTTTGCTCAAATGAGGAA
GCAACTCAGGTCCACCCACATTTCTTTGCAGACTTGAGGAAAAGTTTCTG
TAGGGTTCATTCTTGGGCATGGAGTTGTCAGGGCTTAGAGAGGTGAGGCG
TCTCCCACTTGCAGGTCGCCACTCTGTTCTGCAGAGCGGCTGAACCTGTG
CGCACTCTCCTTGAGTATTTGACAAGACGATTCTATCCCCATCCTCCTCC
TGTCAAAGCCACACGCCTGCCAATCCTTTTTTATTTAGATTGTTCCCTCT
GAGATTAGTTGTTTGCATTTCCCTCAGAACTAGCAAGATGAAGGCTTTCT
GAACCTTTACCAGCCTATCTGGCTCCCTTTCCCTTGGGTCCCCGCCACTG
TCTTCTACCTACTCCTCTAGCTTTTCAAATTCGCGCGCTGATTCAGAAGA
ATCTGAATTTGTCATACAATCCAGGTGCTCTTGTTTTGCTGATGGAAATT
ATTGCATTCCCTTTATTACTGGTTTCTTATTTCTTGGTGGGCATTTTTTG
TTGAAAAGACAATTTGATATTTATACATCAAACTAGTCAATCATCTTTCC
TATCTTATCCATTTTAACTATCTTTTTTTCTTATTTTTCTATCTTTTCAA
CCAATCCTATGCTATCCTTTTCTTTCTTATCTCTCTATCTATTCTATTTT
ACCCATCTATCCCTATACTCC
NCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTGGCTACCTGGGCGTCTGCTGGG
CTCATGCACAGTATCTACCTGGCCTTTTCCCTGTGGGTGGCTATTTAGGT
CGTTTCATCCTTGAAGTTACAGAGAGTCCCCACAGTGAGTACACGAGGCA
AAGCTTCCAGGGAGGAGCGCTTTTTGCCATTTTAAGGGATGTTCCATTTG
GAATCTGTACTGATTCACACTTCCATGAGGGATCTGGAAGTCTGCTCAGT
TCTTTTCACACCACCACTCTCAGTATGTTTTTAAATCTTTCACAGTCTGC
TTGGTGAAAGATGCTATTTCCATGTGGCTTAATTTACTTGTAGGTTACTG
CATCAAGCTTGGCTGAGTTTATGCCTCTGTTACCAACCGGAGATAAAGCT
ACTGGGGCTTTTGCAGGTCTGATGACTTGTAGCTTGATAATGTAATTGCA
TCGGTGACGAGCTTAATGAAAGTTCTCTTAAATGTGTCTGTTGGTTGCCT
CCTTAATTTTGACCATTTTGGTGGAAACTTTCTCAGAGATTCTGTAACTT
GATTTTCCTCCCTTTGTACGCTTACGGTTTTTCGTGCCGCTGACTAAGAG
TTATCACGATTGTGCAATACCAATCGTAATTTCATTTCTTATGTTTTACA
CACCTCTCTTATGTTAATCTGACATTATTCCTATTTTTTTCTTACTCTAC
CTTTATCCTTTACTTATCCTATCTTTACCAAAAAGATGTTATTATAAAAT
CTTCGTATCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_h21.b1 MSMg01no468_h21.b1 CHROMAT_FILE:
MSMg01no468_h21.b1 PHD_FILE: MSMg01no468_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:43 2005
         (143 letters)



>mm_chr9_61272759_61273301
          Length = 543

 Score =  230 bits (119), Expect = 2e-65
 Identities = 137/143 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   catttccctcagaactagcaagatgaaggctttctgaacctttaccagcctatctggctc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 343 catttccctcagaactagcaagatgaaggctttctgagcctttaccagcctatctggctc 284

                                                                       
Query: 61  cctttcccttgggtccccgccactgtcttctacctactcctctagcttttcaaattcgcg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 283 cctttcccttgggtccctgccactgtcttctacctactcctctagcttttcgaattcacg 224

                                  
Query: 121 cgctgattcagaagaatctgaat 143
            |||||||| |||||||||||||
Sbjct: 223 tgctgattcggaagaatctgaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no468_h21.g1 MSMg01no468_h21.g1 CHROMAT_FILE:
MSMg01no468_h21.g1 PHD_FILE: MSMg01no468_h21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:43 2005
         (332 letters)



>mm_chr9_61059204_61059935
          Length = 732

 Score =  607 bits (314), Expect = e-178
 Identities = 326/330 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   tggctacctgggcgtctgctgggctcatgcacagtatctacctggccttttccctgtggg 62
           |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||
Sbjct: 203 tggctacctgggcgtctgctgggcttgtgcacagtatctacctggccttttccctgtggg 262

                                                                       
Query: 63  tggctatttaggtcgtttcatccttgaagttacagagagtccccacagtgagtacacgag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 tggctatttaggtcgtttcatccttgaagttacagagagtccccacagtgagtacacgag 322

                                                                       
Query: 123 gcaaagcttccagggaggagcgctttttgccattttaagggatgttccatttggaatctg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcaaagcttccagggaggagcgctttttgccattttaagggatgttccatttggaatctg 382

                                                                       
Query: 183 tactgattcacacttccatgagggatctggaagtctgctcagttcttttcacaccaccac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tactgattcacacttccatgagggatctggaagtctgctcagttcttttcacaccaccac 442

                                                                       
Query: 243 tctcagtatgtttttaaatctttcacagtctgcttggtgaaagatgctatttccatgtgg 302
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 443 tctcagtatgtgtttaaatctttcacagtctgcttggtgaaagatgctatttcaatgtgg 502

                                         
Query: 303 cttaatttacttgtaggttactgcatcaag 332
           ||||||||||||||||||||||||||||||
Sbjct: 503 cttaatttacttgtaggttactgcatcaag 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)