BAC Information

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BAC

Clone NameMSMg01-468K17
Chromosome9 (Build37)
Map Location 101,980,151 - 102,115,237
singlet/doubletdoublet
Overlap geneEphb1
Upstream geneMsl2l1, 3222402P14Rik, LOC100041065, EG382099, 9630041A04Rik
Downstream geneKy, LOC664843, Cep63, Anapc13, Amotl2, EG434510, Ryk, Slco2a1, Rab6b, Srprb, Trf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-468K17.T7 (MSMg01no468_k17.b1)MSMg01-468K17.TJ (MSMg01no468_k17.g1)
ACCAG552087AG552088
length732792
length of high quality
(start - end)
195 (127 - 321)248 (77 - 324)
definitionCHROMAT_FILE: MSMg01no468_k17.b1 PHD_FILE: MSMg01no468_k17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:58 2005CHROMAT_FILE: MSMg01no468_k17.g1 PHD_FILE: MSMg01no468_k17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:44:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,980,151 - 101,980,344)(102,114,990 - 102,115,237)
sequence
GGATCAAAATTTGCGGCGCTAAACGACTCACATATTCCTACCTCCGCGGA
ATTCATCCTAAATAACAATCACATGTGATTTAAAAACAGAACTATGGGTT
TTCATGACAGTTTATGATTTGCACCAGGGGCAACCTAAAAACCACAAAAG
GACACAGCATGATTTAACTTACTCTCTATTGTGAGGCTTGGTGACCTGAA
TAAATACTTATTACTTATTAATGACTGAAAAATAACCACATATAACAGGG
ACAAACAGTACTATGCAGTACTAGTAATAATAATTTTATAACTTTTTAAA
TATATAATAGTGAGATGAGGTTGGTGCTTTTCCNCGCNCCCCGGCCGCTG
TGCCCTCTTTTTTTTCCCTCCCACTCTCCCCCCCTTTTATCTTTTTTTGT
TTTCTTTTCTCCCCCCCCTTTTTCTCTCCTATCCTTTCCTTTTTTCCCCC
TCCTTCCTTTTCCCCTTTCTTCCCCTTTTTTTTCCCTCTTTTCTCTTCTC
CTATTTTCCCCTTTTCTTTTTCCTTTCTTTTTTCTTTCTTTCTCCTTTAT
ATCCCTATTTTTTTATTTCCTCTCATATTCCTTCCTCTTGTTCTTCTCCT
CCTTTCCTTTCCTCTCCTCTCTTCTTCTCCTTTTTCTTTTTTTTTCCTAT
TTTCCTCCCCCCTCTTCTCTTTTACTTTTCTTTTTATTTTGCCTTTTTTC
CCCCTTTTCCTTTTATTTCCCTTCCCTCCCTT
NCCCATGATAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGACTTATCTTGCTGACTGAGATC
TCTGCTTTGAGTACTGCAGGCCAGCTGATAATGAATTGTGTTTGCATTTA
GATACAGACAATTAATACATTATGTGACGATGAGCCAGAGGTGAAACGCT
GGGCCATCCTGGAGGTTACTGGGACCTGTTTGTGGCTAGCCAAATCTGCA
TAGAGCTGCGGGTGGAGAAAAGGCCAGGGTGATATTTAGATATTTAGAGG
GGGGTAACTGCAAGCCATGGATGATTTTTCTGGTGTCCCACCTCCGCCGG
AGAGTGGTAATGGGCTCAACTAGAGAGCTGAATTTTCAAAGAGACACTGG
AAAAGGTAGACTGTGTTTAGTGGGTACTGATGACTGATCTTGCCATTTAA
GGAATGTTCATGCTTCTTGGTACCTCGGTGTACAAATAATCCCAATGCCA
GGTCCCCTAAGTATAGGAATGAGATAACTTTTCCCCCAGTATCATCATAC
TTTCCCTCATGTCTTCTGAAATTTAAATTCCTTATGCCTTCGTTTTTGAC
ATCTTCCCTCCTATCTTGTCTTTATCTTTGGGCTCATTCTCTCCTCTCCT
TTTTTCCACTTCCCTTTTTATCTTTTCTTCTTCTCTTTTTCTCCATTCCT
TCTTCACATTTCTTCTCCTCTTTTCTATCTCCTTCCTTCCTTTTTACTCT
CTCTCTTTTCCCATTTCTTTATCACTCTTTTATTCCTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no468_k17.b1 MSMg01no468_k17.b1 CHROMAT_FILE:
MSMg01no468_k17.b1 PHD_FILE: MSMg01no468_k17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:58 2005
         (195 letters)



>mm_chr9_101979951_101980545
          Length = 595

 Score =  360 bits (186), Expect = e-104
 Identities = 192/194 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggggcaacctaaaaaccacaaaaggacacagcatgatttaacttactctctattgtgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggggcaacctaaaaaccacaaaaggacacagcatgatttaacttactctctattgtgagg 260

                                                                       
Query: 61  cttggtgacctgaataaatacttattacttattaatgactgaaaaataaccacatataac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttggtgacctgaataaatacttattacttattaatgactgaaaaataaccacatataac 320

                                                                       
Query: 121 agggacaaacagtactatgcagtactagtaataataattttataactttttaaatatata 180
           |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 321 agggacaaacagtattatgcagtactagtaataataattttataacttttaaaatatata 380

                         
Query: 181 atagtgagatgagg 194
           ||||||||||||||
Sbjct: 381 atagtgagatgagg 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no468_k17.g1 MSMg01no468_k17.g1 CHROMAT_FILE:
MSMg01no468_k17.g1 PHD_FILE: MSMg01no468_k17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:44:58 2005
         (248 letters)



>mm_chr9_102114790_102115437
          Length = 648

 Score =  464 bits (240), Expect = e-135
 Identities = 246/248 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacttatcttgctgactgagatctctgctttgagtactgcaggccagctgataatgaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 agacttatcttgctgactgagatctctgctttgagtactgcaggccagctgataatgaat 389

                                                                       
Query: 61  tgtgtttgcatttagatacagacaattaatacattatgtgacgatgagccagaggtgaaa 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 388 tgtgtttgcatttagatacagacaattaatacattatgtgacaatgagccagaggtgaaa 329

                                                                       
Query: 121 cgctgggccatcctggaggttactgggacctgtttgtggctagccaaatctgcatagagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 cgctgggccatcctggaggttactgggacctgtttgtggctagccaaatctgcatagagc 269

                                                                       
Query: 181 tgcgggtggagaaaaggccagggtgatatttagatatttagaggggggtaactgcaagcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 268 tgcgggtggagaaaaggccagggtgatatttagatatttagagggggctaactgcaagcc 209

                   
Query: 241 atggatga 248
           ||||||||
Sbjct: 208 atggatga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)