BAC Information

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BAC

Clone NameMSMg01-469B19
Chromosome9 (Build37)
Map Location 75,024,483 - 75,024,722
singlet/doubletsinglet
Overlap geneMyo5a
Upstream geneNr1h2-ps, LOC100040764, Onecut1, BC031353, Arpp19, LOC100040812, LOC677501
Downstream geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1, Gfral
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469B19.T7 (MSMg01no469_b19.b1)MSMg01-469B19.TJ (MSMg01no469_b19.g1)
ACCAG552424AG552425
length2,329787
length of high quality
(start - end)
---240 (72 - 311)
definitionCHROMAT_FILE: MSMg01no469_b19.b1 PHD_FILE: MSMg01no469_b19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:34 2005CHROMAT_FILE: MSMg01no469_b19.g1 PHD_FILE: MSMg01no469_b19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:45:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCGCACTNACGTTNCTATNACACACGTACATTNCTGANTCAGTATTTATN
NTGATNTATACAATANACGGAGTGATTTTTNATCCCTATNCTGCGCGCAG
CAGAGCNGACGGTGTCGTNCGGTGNCAGTGGTCGCATGACCAGTAGTAGT
AGTCTCTTCGACGTCTAGAGTACGCCTGCGTATGTAGCGTCGACGCGGCC
GTTTGTGCCCGGAGTGCACTGTAGCGCGCAGCGCGTCAGAATGACATGCT
GTAGTATATTGCTGGCGGCAGTANCTAGATACNNCATACGTCTACACAGA
TCGATCGAGTAGCACCGACAGCCGNCCCGACGCGATACGNGACGTAGTGA
TGATGATATCTCATATTCTATACTCACGCCCATATATATACCGCTAGCAC
TAGTACTATNTNACTAGCGCGCACGTACATCAAACGANCAGCACGCAGCA
CGTCGGCGGTCGNACGCATGATAATNTACTCATATCGAANGAGTACTCGA
CGAGTCGATGCAATCCGGCGNTAGTACAGCGACAGTACATTGACAGTCCT
TNNTCTACGATCGTGCTCGCATACATGATACCTANTGTNGTTTGTGNTNC
ATCAGAGCATGGGCTCGATCGCTGGTNTNGNNTGCACGACNCTTGNTGAC
ACACGCTGNGAGCGAAGCTCNTCTGCGGGTCCTGCTGGCTTGTNGCACGC
GCCCTGTACGNCGTGTTGTGATGAGCCCTGCTAGTCGCAGCGTCGCCCGC
TGAGATNACTACGTACTAATCTAGTGTGACGTANTCAGTNGTCTGCCGNG
CGCANTCTAGCTGACGTAGAGTATCGATATCACAGTGTGTAGCCGGANGG
ACGCAGCAGTGACGATGCGCGGGAGAGCNNACGAGACGAGAGTGATCGTA
CAGAGTGAGGGTGNGTTCGATGATATATAGATGTATGTAGAGCGTACTGT
CGNCAGGANCGAGGNCGACGTAGNTCACGACAGATCATNCGNGCTGCGGA
CGTAGTATATCGCGGACTGATAAGACACGGACGGGACGCGATGATCGAGT
GACAGTATCGACTACATACGATAGAGGCGNTGCACAGTCGCGACNGATGC
TATCGACGTCGAGATTNTAATCACANNCAGCGACAACAGTCATAGNTGCG
CTGANGATGCGCGCGATCNGNAGTGTGTGCGATGCGGGACGCGCATANTA
GCGCGCGTGNATTAGTNGTCGCGCGTCGTCGAGACGTACTCTGTATAGAC
GTCAGCGCCGACGTACANGTCAGCAGCTGATCGCGCAGATATNNTGNATN
ATCGCAGCGCAGCTGTACACGAGCGCCGTACTGNATGCGTATAGATACGT
CGCGCATATGGACGATTGTGATTACCGATCANTNGACGTACTATTANAGT
GCGTGCGTNGTAGTAGTAGTACTCATNGTAGAACTGCGTGGGATNCAGCA
GACGACGCTGACGCGCGATGNAGCGTGCCCCGTACATCTGTACACANTCG
ACTCGGATAGTATTACCGGGGGTCGTATATAGTATGATCGATGTATATCG
TGCTCAACACGCNACACGCCNTCATGATCGATGCGTCGTGACTGAGTNCT
CGTGCTAGCTGNGTCAGCACAGCGCGTACTGCCGGTGAGAGTGTCATCAT
CTNACGACTGCATNGCGCTCAGTCGTCTATTCGTNGATTACCGTNACTAG
ATAGTAGTCNTCGGCCTGCCGACTATAGTCGTCGCTACNGCGACTAGCNC
GATGNGCGACGTAGTATCGTGCNGANTGGGCGNCCNNACNGTATAACGCA
GTGTTGCANGCGANCGNANCGTAGTGACATCTACTCGATTTATCNTNCGA
TNCGCAGCACGTCGTAGTCTGCTGATGATACCGCATGACGTTANCGCCAG
TAGCAGTGCTGTTTNATGTAGNCGACCGCNGANTGANCTGATGTGTGCTG
TAGTGCNCGCAGCGNTGATGNCGGTGTNGACGTGAACTACGTGANATGAT
GGNAGCGTNGTGCGACCACCANTGACTGCAGNTGGANCCGGATGAGTCGT
CANTANGTNGATGTAGGCAGCGANTATTGTTNCGTACGGACGTCGNANGA
CTACTACNATCGTCTGCGTNNCTGAGCTGATGACGATACNGCTGCTCGTC
GTAACTTAATCANNTGATTGANTAGACTGATCAANTGTTCANGCAGACGC
NTCGTTNACNAATNATAGTCGGNCGTACGGTGTNCNGAACCANAGTATAC
TGCTCGTTAGAACGAGCCNGANATTNCCTNCGTGCCGAGGCTGCNGACGT
NGGNNTGATGNTCAGTCATTTNNGTTTGN
CGTTTTGTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTATTAAATCAACAGAATCCTATAAATTA
AAAACATACATATAAAGCAAAATTCTAAAAAGCTACATATGGTATTACTG
AATGTAATTTCATATTGACACACAAAGACCAGAGATGGAGTTTGTAAGTT
CACTAGTTTTATTACAATATTTGGAACTCTTGCTTGTGAATGTACAGATG
ATAGCCAAAACTTTTAAAACTTATTTCAGCTCTAAGCATTACTGTAACTG
AGAACATAATGCCATATTTTTAAAGCTTAGGTTTGAAGTTTGTTGTCTGC
TGGGTTGACAGCACACAAACCTTACCTGTCATCTCCTTCGTCTGCTCCAC
AATGCGGTGGTTGAGGGTCTCCTTTTCCTGCTTCAGCAAAGTATTTTCTT
CCTTCAAGTTTGACACCTCCTATGAAACGAATAATCTTGCTGAGGTCGTT
GCACCATAATGAGATCGTCCATTCGACAGTTAATGACTGTGTCTTATGAC
CTCCCACACTTATTACTTTAGACTTGTCACCTGTCCCATTTGTCCTCCTT
TACCCCCCTTCCTCATTTATCTTTTTTTTCCCCTTTCTTTTTCACCTTTT
CCTCTCTCCCCTTTTTCCCCCATTCTTTTCTTTGCGCCCCTACGCCCCCT
TTTTTTTCTTTTTACCCTTTTCCTTCCATTTTTTTTATTTTCCCCTTTTC
CTCGTTCCCCCCTCTTTTCTTTTTTCTCTTACTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_b19.g1 MSMg01no469_b19.g1 CHROMAT_FILE:
MSMg01no469_b19.g1 PHD_FILE: MSMg01no469_b19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:45:34 2005
         (240 letters)



>mm_chr9_75024283_75024922
          Length = 640

 Score =  449 bits (232), Expect = e-131
 Identities = 238/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattaaatcaacagaatcctataaattaaaaacatacatataaagcaaaattctaaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttattaaatcaacagaatcctataaattaaaaacatacatataaagcaaaattctaaaaa 381

                                                                       
Query: 61  gctacatatggtattactgaatgtaatttcatattgacacacaaagaccagagatggagt 120
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gctacatatgctattactgaatgtaatttcatattgacacacaaagaccagagatggagt 321

                                                                       
Query: 121 ttgtaagttcactagttttattacaatatttggaactcttgcttgtgaatgtacagatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgtaagttcactagttttattacaatatttggaactcttgcttgtgaatgtacagatga 261

                                                                       
Query: 181 tagccaaaacttttaaaacttatttcagctctaagcattactgtaactgagaacataatg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tagccaacacttttaaaacttatttcagctctaagcattactgtaactgagaacataatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)