BAC Information

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BAC

Clone NameMSMg01-469H21
Chromosome9 (Build37)
Map Location 40,930,270 - 40,930,519
singlet/doubletsinglet
Overlap gene2810457I06Rik
Upstream geneOlfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148, 9030425E11Rik, LOC100043076, LOC100043071, Hspa8, Bsx, 4931429I11Rik, Crtam
Downstream geneLOC628495, LOC100042464, EG667566, 6720432D03Rik, Sorl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-469H21.T7 (MSMg01no469_h21.b1)MSMg01-469H21.TJ (MSMg01no469_h21.g1)
ACCAG552716AG552717
length780781
length of high quality
(start - end)		250 (70 - 319)436 (74 - 509)
definitionCHROMAT_FILE: MSMg01no469_h21.b1 PHD_FILE: MSMg01no469_h21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:06 2005CHROMAT_FILE: MSMg01no469_h21.g1 PHD_FILE: MSMg01no469_h21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:46:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAACAGCGCGGAATT
CCACAAATATTCCAACTAGTTTCTGAAGAAGAAAATTGCTCCTTTATGAA
CAAAAACTTCTGCAATCAAGGAAGTAGTGTTTTTCTCACTTTCTTGGGTA
CAGATGAGAGGAAAATGGCCTTTCTTGCTTCGGAGGCTTTTGACACTGGG
CTTCAAGTAAAGAAAGAACAGCTGTGATCCCTTTCCCAGAGCACAGAACA
CAGTGGCACAGATCACACCAGCCTCTGCCCTCCCGATGAGGGATCTGCCC
GGCTCTCCCATAATTCTTCTTTTTCATGCTTACAACCTTTATGGAAAAAG
TGTTTCTTCAGCTTCAAAGACACTGCTTTGCCTGTTATTCCTGTAGCCAC
CCACTGCTTGCTTGTAGGAAAATCCCCAAATGTCAAAATTGGGATATTTT
AAAATGAAAGGAGATACTTTTGGGATTAATGAAGCTTGCCTTGCCTTGCC
TTTTGCTGGTGACTGTCAGGCCCCTGGTCTTGCTAAGTCAGCTTGACTTA
AGCGAGAGGCCATGGTGGCCATTTGTGGCAGGATCCTAGGCTTTTGGCAC
GGTTTGCTTCATGACTTTAATGGCGCCGTCTCAAGAAATAAGTGAGTACA
CGCACAGGCCACCTGTTTATTACTTTCGTTCCGGAGGAGACAGAAACCCT
ATGTCTTATACAAATTCTCCGCCCACGCCTAGGTTATATACCCCTCTATC
GTTTCTCTGTTGCTTCCGCCCTCTGCCAGG

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATTCCCAGCAACCACATGGTGGCTCA
CAACTATCCGTAATGGGATATGATGCCTTCTGAAGACAGCTACAGTAGAT
TCATATACATAAAATAAATAAATCTTTATTTTTAAAAAAGTATGTAGCCT
TGTTGGAGGAAGTATGTTGCAGAGGTGGACTTTGGGGTTTCAAAATCTCA
TGCCAGGCTCTCTCTCCCTCTCTCTCTTTCATGAACTCGTGGGGGTGTAA
GCTCCCAGTTATTGTTCCTCCCTGCCAGCACTCTGATGATTATGGACGCA
ACCTCTGAAACTGTAAGGAAATCCCCAGTTAAATTATTTCTTTTAGAAGT
TCCCTTGTCACAGTGTCTCTTCATAGCAACAGAGGAGTAACTAAGACCCC
GGGTTCTGCTTCTGATCAGTGGTGTAAGCTTGAGCAAGTCGCTTCATTTC
TCCAGGCCGTGGCTCCCCGTTGTGTATAACAGGACACTGGCCAACCCGCT
AGCCTCTGAAGGTCTAAAAACCTGGCATTTTTTGAGTAGGGGGGGTTATG
TATAAAACTTCTCTTGTTAGAAATTTTGGAAAACCCCCTTTTTTATGGGG
CCCCCTTAATTTTCCCTTGTTCTGTTTTTGTAAATCCCCTGGTTTATTTG
CCGGGGCGCCCAAAATTTTTTTTTTCCTTTAACATCCTTTTTTTTTTCCC
TACTCCTCTCCCCCCTTTTTTTTCGTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no469_h21.b1 MSMg01no469_h21.b1 CHROMAT_FILE:
MSMg01no469_h21.b1 PHD_FILE: MSMg01no469_h21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:06 2005
         (250 letters)



>mm_chr9_40930070_40930719
          Length = 650

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgaagaagaaaattgctcctttatgaacaaaaacttctgcaatcaaggaagtagtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tttctgaagaagaaaattgctcctttatgaacaaaaacttctgcaatcaaggaagtagtg 391

                                                                       
Query: 61  tttttctcactttcttgggtacagatgagaggaaaatggcctttcttgcttcggaggctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 tttttctcactttcttgggtacagatgagaggaaaatggcctttcttgcttcggaggctt 331

                                                                       
Query: 121 ttgacactgggcttcaagtaaagaaagaacagctgtgatccctttcccagagcacagaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ttgacactgggcttcaagtaaagaaagaacagctgtgatccctttcccagagcacagaac 271

                                                                       
Query: 181 acagtggcacagatcacaccagcctctgccctcccgatgagggatctgcccggctctccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 acagtggcacagatcacaccagcctctgccctcccgatgagggatctgcccggctctccc 211

                     
Query: 241 ataattcttc 250
           ||||||||||
Sbjct: 210 ataattcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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