CGATCAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAATAGGATNNG
NGGAATTCTTTATTCTCTAAGCTTTTAAAAGAGAAATAATCCATAAGCTA
TTACCTAGATTTGACCAAAGAAACAAGAATAAGACAATGCTAAATAAATA
TTAAAACATTACTAAATCTTTTGGGGAGATATAAATGCATGTATTGCTTC
ATTTTAAACTTTACTGCGAGATAATTTCATTTTACTGCACTGACTCTTTC
TGACCATATGAGATATTCTCAGCTTAATTGTGTAGCATATTTTGATTCGA
TGTAAATTTTACCTTACTATATTATCTCTGGAACAACAAACGTACAAAAT
TTATTTGTATTACATTTAACTGTTATATATTCCATTATGATATATATTGT
GAAAAGAAAACCACAGCCACGAATAACAGAATTTCAACTATTCAACAGAT
ATATTCTCTGCCTTAAAATTTTTTTCTATAACTTTTCACCAGTTAACTTT
GAATTCAACAGAACCAAACATCCATTGTAGACAAACCCATGCATATTTCC
TCGTTGTTGATTTTAAGTCATTATTCTTTTGTTCCTGGTGGCATCTGCAG
CTAACTATATAAAAGAAAGCCACCCAGGTACTTGGAACGTTGATAATTAG
TGCAGAACTTATGAATACCTATAAAAATAGATTTGTAATTTTAAAAATAA
AACCTCTGTATTTAAATAGGGCCAAGAAGATGTCAATGCGAGGAAN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTAAGAAGGTTATCTATTCAGT
AACATCCAAATTTACTTCTAGTGGAGAAGGTGAAACTAATTAGGCATTAC
AAAGAATGGAGCCGGAATAGATCAGGGCTGGTCTGCAGAGTGTTTACTTG
GGACAATAGCCAGTCTTACCCAGACAAGAGAATTCACAATGGCCTAGCGA
ATAGGTAGGTTTACCATGAAAGAGTTAGGGAATCCCCCTGAGACAGGTTT
CTTCTCTAGGCCCAAAGAAATCTTATAATCAGGCATTTACTAAGAACCCC
GGGTGGTGGGCTTAACAATAGACTAGTATTACACCTGGCTCCTTTCTTAG
TGGCAACTGCCTGGTCCCCGCCTTCTTTTGATGTATACATTCCTTTTGTA
TTGTGTCACTGTAACTCGGAGGATGTATCTCACCTGGTTTCTTGTCGCTC
TTCTGTATAAAAAGTTTGATGCTCGACTTGAAAAATTACACTCAGATTCT
ACACACTCTCTTGTGTTGTAACTTTTTGTCATTAATTTGCTGACTCCTTC
GCCTACGTGCAACTAGAGACCTGTTCTACACAGTCAGGGACCAAAAAGGG
TCTGCAGCAACCAGATGGCAAAAGGGCAATGTAAGAATTTTGCCAACAGA
AACCAAGACTACTTGGCATCATCAGAACCCAGTACTCCTACCACTGCAAT

Query= MSMg01no469_o10.b1 MSMg01no469_o10.b1 CHROMAT_FILE:
MSMg01no469_o10.b1 PHD_FILE: MSMg01no469_o10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:46:38 2005
         (646 letters)



>mm_chr9_3718338_3719383
          Length = 1046

 Score = 1210 bits (626), Expect = 0.0
 Identities = 641/646 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttttaaaagagaaataatccataagctattacctagatttgaccaaagaaacaagaata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 cttttaaaagagaaataatccataagctattacctagatttgaccaaagaaacaagaata 787

                                                                       
Query: 61  agacaatgctaaataaatattaaaacattactaaatcttttggggagatataaatgcatg 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 786 agacaatgctaaataaatattaaaacattactaaatcttttgggaagatataaatgcatg 727

                                                                       
Query: 121 tattgcttcattttaaactttactgcgagataatttcattttactgcactgactctttct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 tattgcttcattttaaactttactgcgagataatttcattttactgcactgactctttct 667

                                                                       
Query: 181 gaccatatgagatattctcagcttaattgtgtagcatattttgattcgatgtaaatttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 666 gaccatatgagatattctcagcttaattgtgtagcatattttgattcaatgtaaatttta 607

                                                                       
Query: 241 ccttactatattatctctggaacaacaaacgtacaaaatttatttgtattacatttaact 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ccttactagattatctctggaacaacaaacgtacaaaatttatttgtattacatttaact 547

                                                                       
Query: 301 gttatatattccattatgatatatattgtgaaaagaaaaccacagccacgaataacagaa 360
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 546 gttatatattccattatgatatatattgtgaaaagaaaaccacagcaacgaataacagaa 487

                                                                       
Query: 361 tttcaactattcaacagatatattctctgccttaaaatttttttctataacttttcacca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tttcaactattcaacagatatattctctgccttaaaatttttttctataacttttcacca 427

                                                                       
Query: 421 gttaactttgaattcaacagaaccaaacatccattgtagacaaacccatgcatatttcct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 gttaactttgaattcaacagaaccaaacatccattgtagacaaacccatgcatatttcct 367

                                                                       
Query: 481 cgttgttgattttaagtcattattcttttgttcctggtggcatctgcagctaactatata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cgttgttgattttaagtcattattcttttgttcctggtggcatctgcagctaactatata 307

                                                                       
Query: 541 aaagaaagccacccaggtacttggaacgttgataattagtgcagaacttatgaataccta 600
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aaagaaagctacccaggtacttggaacgttgataattagtgcagaacttatgaataccta 247

                                                         
Query: 601 taaaaatagatttgtaattttaaaaataaaacctctgtatttaaat 646
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 taaaaatagatttgtaattttaaaaataaaacctctgtatttaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)