BAC Information

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BAC

Clone NameMSMg01-470D22
Chromosome9 (Build37)
Map Location 29,837,381 - 29,837,625
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, LOC625222
Downstream geneSnx19, LOC666478, Adamts15, Adamts8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470D22.T7 (MSMg01no470_d22.b1)MSMg01-470D22.TJ (MSMg01no470_d22.g1)
ACCAG553292AG553293
length781794
length of high quality
(start - end)
343 (71 - 413)245 (72 - 316)
definitionCHROMAT_FILE: MSMg01no470_d22.b1 PHD_FILE: MSMg01no470_d22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:05 2005CHROMAT_FILE: MSMg01no470_d22.g1 PHD_FILE: MSMg01no470_d22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAAATTTGCGGCGCTAAACGACTCCTATTTTCACACCTGCGCGGAATTC
TTTGTTCTTTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGA
AGTCCAACTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGT
CCCATTTGTCAATTCTTGATCTCACAGCACAAGCCATTGCTGTTCTGTTC
AGGAATTTTTCCCCTGTGTTTTTATCTTCAAGGCTTTTCCCCACTTTCTC
CTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACT
TAGATTTGACCTTAGCACCAGGAGATAAGTATGGATCGATTCGCATTCTT
CTACACGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATGCTGTC
TTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCTAACATCCCGTGACCCC
ATGTGCGTGCTTCCATTTCCGGCTCTCTCATTCTCTCTCCTCTGGTCCTA
CTTGTTTGGTTCCACCCCAGCATCATGCGGTTTTTTATTATACCCTGCTC
TCCCACCCTACCTTTTATTCTCTCCTATCGGTGCCTTTCCCCTCCCATTT
TTTTCTCCTCTCTTTGCCCACCCCTTTTTTTTTTCCCTCACAGTTCCCCT
CTCTTCCTCTCCCCCCTTATTCTTCCTTTTC
AATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTTGGCTTGCCCCAGCCAGCAGTGGAGGT
CACCTTGCCCAAGGCTGGCTTCTGAGTGTCAGACAAACAGAGGCCACAGC
AGAGCTAAGGAGCCACCGTCCTCAGCAGGGATGTGAACCCAGAAAACCAG
AGGGTGTGCTTGTTTGGGGGAGAAAACCGATGAGAGACACTCCGGCAGAA
GTGAGCAGGAGAGATGAATTAATGAAAGGCACAGTCATGGCAAAGTGGAC
TGCTAGTCTATGAACACTTTTTTATGGCTGGGTTGTGGGCTCTCCTCCTC
AGCCTGGTTTATATTGTTGTAGCAAAGGGAAACTGCACTGTGTGTTTCTC
TCTTTTTCATGCCCTCCCAGCTCCATGTCGTTCTGTCTTCATGCTTTCTT
CTACATACCTTTATCCCTTATTTTCCCCACTTTTTCTTTTTTTCCCTCCG
ACCTCTTTTGTTCCCTACTGTGTTTTCGCTCCCCCTTCCCCTGCTCGTCT
TTTTGCCCGTTTCCTTTTCTTGCATATTACGTTTCGTTACTTTGTCCTTC
CCTTCCCTTTCCCCTTTTCCCTGTCTTTCATTTCTTTTCCCCCCCCCTTG
CTTTCCCTTTCCCCCTTTCCGTTTTCCTCATCCTCTTTTCTTTCCCTTCC
TCCGTGTTTCTTCTTTTCCCTCCTTGCTTTTCCTTTATATTCCTTCTTGC
CTCCTTTATTCTTTCTCTCTTCCCCCATTCATTTCCCTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_d22.g1 MSMg01no470_d22.g1 CHROMAT_FILE:
MSMg01no470_d22.g1 PHD_FILE: MSMg01no470_d22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:05 2005
         (245 letters)



>mm_chr9_29837181_29837825
          Length = 645

 Score =  435 bits (225), Expect = e-126
 Identities = 240/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttggcttgccccagccagcagtggaggtcaccttgcccaaggctggcttctgagtgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttggcttgccccagccagcagtggaggtcaccttgcccaaggctggcttctgagtgtca 260

                                                                       
Query: 61  gacaaacagaggccacagcagagctaaggagccaccgtcctcagcagggatgtgaaccca 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacaaacagaggccatagcagagctaaggagccaccgtcctcagcagggatgtgaaccca 320

                                                                       
Query: 121 gaaaaccagagggtgtgcttgtttgggggagaaaaccgatgagagacactccggcagaag 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaaaccagagggtgtgcttgtttgggggagaaaaccgatgagagacactccggcagaag 380

                                                                       
Query: 181 tgagcaggagagatgaattaatgaaaggcacagtcatggcaaagtggactgctagtctat 240
           |||||||||| ||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 381 tgagcaggagggatgaattaatgaaaagcacagtcatggcaaggtggactgctagtctat 440

                
Query: 241 gaaca 245
           |||||
Sbjct: 441 gaaca 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)