BAC Information

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BAC

Clone NameMSMg01-470H01
Chromosome9 (Build37)
Map Location 52,282,926 - 52,283,097
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneAI593442, Gm1715, Ddx10, Exph5, Kdelc2, 4930550C14Rik, Atm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-470H01.T7 (MSMg01no470_h01.b1)MSMg01-470H01.TJ (MSMg01no470_h01.g1)
ACCAG553442AG553443
length748781
length of high quality
(start - end)
165 (87 - 251)245 (76 - 320)
definitionCHROMAT_FILE: MSMg01no470_h01.b1 PHD_FILE: MSMg01no470_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:21 2005CHROMAT_FILE: MSMg01no470_h01.g1 PHD_FILE: MSMg01no470_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:47:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXCTATTTCCACACCATCCGCGG
AATTCTTGGGATCTCTAAAAAAAATTAGCTTCATCTGAGAAAATGTCTAC
ATCTCTTGCCAACATGCACAGTACTGAGAAGTGGCAGTCTGAGTCAGTCC
AGAGCAGTCTGTCTCCGGGGTCTTTCCTGGGGTAATGTTTCAAATCTCTG
ATGTGCATTCAGACTGGAGGCAACATAATAATCAAGTCCAGTGAGAGAGT
ATACTGTACAAGGCAGAAGGAAGGATGCTAATCCAAAGCTTCCATCTTGC
TCTTTGCAAGATAAAATCATTTTTATTATTACTATTACTAACGAGCACTT
AAGCGCCATGTTCTGTGTAATATACAAGAGAGGGAGACAGCTATGTCTTA
CATTACGAAATCTATGGCCCCCATATTAATGCATTGATAGCCTTAACGGC
GGTAATCAAATATATCTCTTGCCACATGGCGCTTTAAGAGCTTACCCCAT
CTTGGCACACCCATCATTGATTGCCCGCGCTGCCTGTGCGCATCCCTATG
TCCCACAGATAATGCACCCCCATGTCCTCCCTCCCTTGCTTTCCCCCATA
CCTCTCGCCACCACCCCTCTCTTGCAATTACCTACCCCCCCGCCTCCGCC
ACACCGCCCGCCCTCCCCACTCCCCTCCTCCCGCCCTGCCTCTTTTCTTC
CCCCGCCCCTCCGCCTTCCCTACCCCCCCTCCCCCTCGCTCCTCCTTC
NCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTCTCTCTACCTCCCATCTTGTG
GTAAGAGCTCTGGGATAACCAATGTGTGTACTGTAGTACCTGGCTCAGCT
TGGGTTCTGGGAATTCGGACTCAGGTACTCATATTTACGTGTCAAGTACT
TTACTCACTGAGCAGTCTTACCATCAATGGATAAAATTACTTTTGTCTGA
GCACTTTATAAATTCCTTTAGCTGACCCACATTATAGGTCTCTACTTGAT
GTTGCTGACGCCTCTGTTCAACTGCTGCCAGGAAGTCTGTAGTAAACTGT
ACACTTGCGATGCTGTGCGGCCCTGCCTCTCCCCCAAGTTGCCCAGTATC
TGGAGCTAGTTCTTATACCCTGCCTTTAGGCTGTCCTAGATGTACACTAT
CTGCACATTTGCATTAAACTGATTACATACCCTGGGAAATTTCCACATGA
ACATCAATCTTTAAGATACTCTGATTTTACATAGACCTTATCCTTACCTT
TGCTTATAACCCACTCCCACAGAACTATTATTCTCATCTTTTCCTTATCC
TCCAAACGAAGTTTCCCTCCTTCTTCATTAACTTTATCTTAGTATCACTT
CATTTATCCCTATAATATTAATTGTCCTTATTTTCGTCTCCCCTTCTCTT
CACTTCCTTGACCTCTCCCTCCATTTTGCTCACCCTTTCTCCTTTCCTAC
TCTTACTCCCTCCTTAATTCTTTTCTCTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no470_h01.b1 MSMg01no470_h01.b1 CHROMAT_FILE:
MSMg01no470_h01.b1 PHD_FILE: MSMg01no470_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:47:21 2005
         (165 letters)



>mm_chr9_52282726_52283297
          Length = 572

 Score =  286 bits (148), Expect = 4e-82
 Identities = 163/172 (94%), Gaps = 7/172 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gagaaaatgtctacatctcttgccaacatgcacagtactgagaagtggcagtctg----- 55
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 201 gagaaaatgtctacatctcttgccaacatgcacagtactgagaagtggcagtctggggtc 260

                                                                       
Query: 56  --agtcagtccagagcagtctgtctccggggtctttcctggggtaatgtttcaaatctct 113
             ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tgagtcagtccagagcagtctgtctccagggtctttcctggggtaatgtttcaaatctct 320

                                                               
Query: 114 gatgtgcattcagactggaggcaacataataatcaagtccagtgagagagta 165
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 gatgtgcattcagactggaggcaacataataatcaagtcaagtgagagagta 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 165
Length of database: 572
Length adjustment: 8
Effective length of query: 157
Effective length of database: 564
Effective search space:    88548
Effective search space used:    88548
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)