Query= MSMg01no471_k01.b1 MSMg01no471_k01.b1 CHROMAT_FILE:
MSMg01no471_k01.b1 PHD_FILE: MSMg01no471_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:56 2005
(688 letters)
>mm_chr9_110142158_110143245
Length = 1088
Score = 1224 bits (633), Expect = 0.0
Identities = 674/693 (97%), Gaps = 12/693 (1%)
Strand = Plus / Minus
Query: 5 gaattccaggc---tttccaagacggtacaacagtgagactctatcttaaaaattaaacc 61
||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 972 gaattccaggccagt---caagatggtacaacagtgagactctatcttaaaaattaaacc 916
Query: 62 catataaatacatatgtatgtaattctagtgtgcatgtgaaggccagaggacaattcttg 121
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 catataaatatatatgtatgtaattctagtgtgcatgtgaaggccagaggacaattcttg 856
Query: 122 ggagtcagttctctcccactatgtgtgtagccacgggactgaacttatgtcatcaggctt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 ggagtcagttctctcccactatgtgtgtagccacgggactgaacttatgtcatcaggctt 796
Query: 182 ggttgcaagcacctcttatcggctgatgagaccgggttccatctaagcggtacctgacta 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ggttgcaagcacctcttatcggctgatgagaccgggttccatctaagcggtacctgacta 736
Query: 242 actctggctcactagggctgttcccctgggaggaggcaggatgtcctcctcatcttcctt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 actctggctcactagggctgttcccctgggaggaggcaggatgtcctcctcatcttcctt 676
Query: 302 tgatgaaggggaaggcatccattcacactgaagcacgtgtaaaggccctgagcaacgaca 361
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||
Sbjct: 675 tgatgaaggggaaggcatccattcacactaaagcacgtgtaaaggccccgagcaacggca 616
Query: 362 ttttaagatctaaccaggcccaggtgagactgagtactctttctttacaggacacactag 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ttttaagatctaaccaggcccaggtgagactgagtactctttctttacaggacacactag 556
Query: 422 aaatgaatggatgaatgcagagaatgggactagaattcataaatggtatttcatttattc 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaatgaatggatgaatgcagagaatgggactagaattcataaatggtatttcatttattc 496
Query: 482 aatgcaaacaagggacattaagccactttcattcattttctcccaaactctcaaagctcc 541
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aatgcaaacgagggacattaagccactttcattcattttctcccaaactctcaaagctcc 436
Query: 542 tttacctcattagaacaaaacctaaagaaaacaaacaaa----caaacaaaaaaacacca 597
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 435 tttacctcattagaacaaaacctaaagaaaaaaaacaaataaacaaacaaaaaaacacca 376
Query: 598 aaaaaaaaaaaaa--cccaacaaaaaacaaaaacccacactgagaaacacatttgtacaa 655
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aaaaaaaaaaaaaaacccaacaaaaaacaaaaacccacactgagaaacacatttgtacaa 316
Query: 656 aaaccacacagtatccaagcccgcccctcacaa 688
|||||||||||||||||||||||||||||||||
Sbjct: 315 aaaccacacagtatccaagcccgcccctcacaa 283
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space: 730884
Effective search space used: 730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no471_k01.g1 MSMg01no471_k01.g1 CHROMAT_FILE:
MSMg01no471_k01.g1 PHD_FILE: MSMg01no471_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:48:56 2005
(572 letters)
>mm_chr9_109954597_109955568
Length = 972
Score = 1077 bits (557), Expect = 0.0
Identities = 568/572 (99%)
Strand = Plus / Plus
Query: 1 tcctggaacagaataagctcggcttttttgaggggaagctagacaaagaacttagcatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcctggaacagaataagctcggcttttttgaggggaagctagacaaagaacttagcatcg 260
Query: 61 aaaagcctaacaaggcgtatcaagaaacctccggtcaccttgagagtgggtatgtgattt 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 261 aaaagcctaacaaggcgtatcaagaaacctccggtcaccttgagagcgggtatgtgattt 320
Query: 121 caggaacctgccaaccctcggaggggaacttagttcaccagaaggcagcagagttccacc 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caggaacctgccagccctcggaggggaacttagttcaccagaaggcagcagagttccacc 380
Query: 181 cgggactcaccgaggggaaagacaaagcagctacagttcaggggaaggtggctgggaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgggactcaccgaggggaaagacaaagcagctacagttcaggggaaggtggctgggaaga 440
Query: 241 gtggactagagatcaagagccagccagatctaaattttcccggggctgctgacactctca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtggactagagatcaagagccagccagatctaaattttcccggggctgctgacactctca 500
Query: 301 ctcaacatggtgaggaacaagaaaccagtgcttggaacgccaacttttactcagtaactc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcaacatggtgaggaacaagaaaccagtgcttggaacgccaacttttactcagtaactc 560
Query: 361 agagccctcaggctgcaactccaggaaaagagaagaatggcctcgtctccagctgctcgg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 561 agagccctcaggctgcaactccaggaaaagagaagaatggcctcgtctccagctgctctg 620
Query: 421 tgactggggtgatgagtgataactctgggcagcttaataataagtccccattactggtgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgactggggtgatgagtgataactctgggcagcttaataataagtccccattactggtgg 680
Query: 481 ctatcacccacccagacccaactagtgagcatttgcccaccactagtccaccaatcacta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctatcacccacccagacccaactagtgagcatttgcccaccactagtccaccaatcacta 740
Query: 541 tggtggaattcactcangaaaatttgaatgca 572
|||||||||||||||| |||||||||||||||
Sbjct: 741 tggtggaattcactcaggaaaatttgaatgca 772
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 572
Length of database: 972
Length adjustment: 10
Effective length of query: 562
Effective length of database: 962
Effective search space: 540644
Effective search space used: 540644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
