BAC Information

Click to search

BAC

Clone NameMSMg01-471N15
Chromosome9 (Build37)
Map Location 32,798,108 - 33,049,098
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
Downstream geneLOC100042343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-471N15.T7 (MSMg01no471_n15.b1)MSMg01-471N15.TJ (MSMg01no471_n15.g1)
ACCAG554522AG554523
length755761
length of high quality
(start - end)		629 (47 - 675)608 (76 - 683)
definitionCHROMAT_FILE: MSMg01no471_n15.b1 PHD_FILE: MSMg01no471_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:15 2005CHROMAT_FILE: MSMg01no471_n15.g1 PHD_FILE: MSMg01no471_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,798,108 - 32,798,733)(33,048,491 - 33,049,098)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTACATGTTACATTTCTAATTACTTTTCTCTATACCCTTCTAAGC
TGATTTCCTGAGTGGATCATGTTACTGGGGTCTTGCAGATGGAAAGCATG
GCATTATTGGAATGGAGCTTGGATGACACCTGTCATCTATTTAATAGTCA
GATGTCTTCCTTTCTTCCTTTCTGCTTAGTTGATCTCCATGATGTTTGCA
GTTGGACATCTTTCACACACTAAAATAGTATATTTGGGATATATACAGCA
AATGTTGACTTTTTTAAAATCTGAATCTTATCTTTTTAAAATTTTACAGC
ATATTAGCCCGACTTATGGAAGAAGCTCAGAATCCACAAGTCTAACTCAG
AAATGTTGTATTCAAATAAGTATAATGACCCACTTTCCTCTAAAATAATG
AGGGTTATGATTTTAGGGTGAAGAAATTCTTGACTATCACATACGTTTGG
GCATTTGGATGTTTTCACCCCATTGCCAATGATATAGGGATCCAAACAGG
TAGGGAAATGTTTAACCTTGGCCTTGAACTCTTAAAACTCTGGGCATAAG
TTATTTTCTTTAATGTGTGAATATAAACACAAATAATACTCCTAAACAAA
TGTGACATTATTCTATATGTGTGTACTCCAGTGAATTATATTTATAGCCA
TTGGCATTACATGTAAAGTGGGAAGTAAGTTGACACAGCATCTTTAGGAG
CTCTG

NCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGTCTTCCCTAGTGTTAGGGCCTG
TGGTAAGCATGGGCTTTATCAGTGCCAAGCAGTGAGTCAGGGAACGGGTG
GCCCATTCTGTGGTTTTCAGTGGGAGGTGGGGTGTGTGTGGAAATTTTAA
TATCTCAGACTGTCCTGTTCATACACATCCTTTAAAAGCCAGTTACAAGG
GTGTGTGAACGTTAAAAACCCCTCTTCTCAAGCCTTGACCAAAGGAGGGC
TTGAGCTCGGAGGGGCTTTCCAGGATAGTCTCCAAGTACAATAATGTCAT
TTTTCATGAACTTTTCTGAGACCTGAGTCCAAAACAGCCTGTGGCCTCCA
TCCATCACTTCTAAGCTAGCAGTAAAGACACCCTTGGAAAGACTTATGCT
CTCTGAGCCAAACCACCAACAGCTACTCTTTCACAAAGGCTTCCTGGCCT
AACCTACATTCTGCTAACCACACTGGCAATGCTCTGCAATACTGTGCTGC
AAGGAGGCCATCTTTCTGGGAGTAGGTATTTGAGACAGACACTTAGAAGA
CCAATTTTAATGTGCAGATTATAATTTGTGGAGCTTTGAGTGTGGGTTGT
GACAGAGAGGGCACTAAAAACGGGTCATGCATGGTTTGTTTTTATGGGAC
CCAGTGGAAAAATTGTGTGAGAGGATTTTGTATGAACATTTCCAGGTAGA
ATTTTATTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no471_n15.b1 MSMg01no471_n15.b1 CHROMAT_FILE:
MSMg01no471_n15.b1 PHD_FILE: MSMg01no471_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:15 2005
         (629 letters)



>mm_chr9_32797905_32798933
          Length = 1029

 Score = 1180 bits (610), Expect = 0.0
 Identities = 622/626 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctacatgttacatttctaattacttttctctatacccttctaagctgatttcct 63
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctacatggtatatttctaattacttttctctatacccttctaagctgatttcct 263

                                                                       
Query: 64  gagtggatcatgttactggggtcttgcagatggaaagcatggcattattggaatggagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagtggatcatgttactggggtcttgcagatggaaagcatggcattattggaatggagct 323

                                                                       
Query: 124 tggatgacacctgtcatctatttaatagtcagatgtcttcctttcttcctttctgcttag 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggatgacatctgtcatctatttaatagtcagatgtcttcctttcttcctttctgcttag 383

                                                                       
Query: 184 ttgatctccatgatgtttgcagttggacatctttcacacactaaaatagtatatttggga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttgatctccatgatgtttgcagttggacatctttcacacactaaaatagtatatttggga 443

                                                                       
Query: 244 tatatacagcaaatgttgacttttttaaaatctgaatcttatctttttaaaattttacag 303
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 444 tatatacagcaaatgttgacttttttaaaagctgaatcttatctttttaaaattttacag 503

                                                                       
Query: 304 catattagcccgacttatggaagaagctcagaatccacaagtctaactcagaaatgttgt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 catattagcccgacttatggaagaagctcagaatccacaagtctaactcagaaatgttgt 563

                                                                       
Query: 364 attcaaataagtataatgacccactttcctctaaaataatgagggttatgattttagggt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 attcaaataagtataatgacccactttcctctaaaataatgagggttatgattttagggt 623

                                                                       
Query: 424 gaagaaattcttgactatcacatacgtttgggcatttggatgttttcaccccattgccaa 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gaagaaattcttgactatcacatacgtttgggcatttggatgttttcaccccattgccaa 683

                                                                       
Query: 484 tgatatagggatccaaacaggtagggaaatgtttaaccttggccttgaactcttaaaact 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgatatagggatccaaacaggtagggaaatgtttaaccttggccttgaactcttaaaact 743

                                                                       
Query: 544 ctgggcataagttattttctttaatgtgtgaatataaacacaaataatactcctaaacaa 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ctgggcataagttattttctttaatgtgtgaatataaacacaaataatactcctaaacaa 803

                                     
Query: 604 atgtgacattattctatatgtgtgta 629
           ||||||||||||||||||||||||||
Sbjct: 804 atgtgacattattctatatgtgtgta 829


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space:   630761
Effective search space used:   630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no471_n15.g1 MSMg01no471_n15.g1 CHROMAT_FILE:
MSMg01no471_n15.g1 PHD_FILE: MSMg01no471_n15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:15 2005
         (608 letters)



>mm_chr9_33048291_33049298
          Length = 1008

 Score = 1160 bits (600), Expect = 0.0
 Identities = 606/608 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcttccctagtgttagggcctgtggtaagcatgggctttatcagtgccaagcagtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 ttgtcttccctagtgttagggcctgtggtaagcatgggctttatcagtgccaagcagtga 749

                                                                       
Query: 61  gtcagggaacgggtggcccattctgtggttttcagtgggaggtggggtgtgtgtggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 gtcagggaacgggtggcccattctgtggttttcagtgggaggtggggtgtgtgtggaaat 689

                                                                       
Query: 121 tttaatatctcagactgtcctgttcatacacatcctttaaaagccagttacaagggtgtg 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 688 tttaatatctcagactgtcctgttcatacccatcctttaaaagccagttacaagggtgtg 629

                                                                       
Query: 181 tgaacgttaaaaacccctcttctcaagccttgaccaaaggagggcttgagctcggagggg 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 tgaactttaaaaacccctcttctcaagccttgaccaaaggagggcttgagctcggagggg 569

                                                                       
Query: 241 ctttccaggatagtctccaagtacaataatgtcatttttcatgaacttttctgagacctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ctttccaggatagtctccaagtacaataatgtcatttttcatgaacttttctgagacctg 509

                                                                       
Query: 301 agtccaaaacagcctgtggcctccatccatcacttctaagctagcagtaaagacaccctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 agtccaaaacagcctgtggcctccatccatcacttctaagctagcagtaaagacaccctt 449

                                                                       
Query: 361 ggaaagacttatgctctctgagccaaaccaccaacagctactctttcacaaaggcttcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ggaaagacttatgctctctgagccaaaccaccaacagctactctttcacaaaggcttcct 389

                                                                       
Query: 421 ggcctaacctacattctgctaaccacactggcaatgctctgcaatactgtgctgcaagga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ggcctaacctacattctgctaaccacactggcaatgctctgcaatactgtgctgcaagga 329

                                                                       
Query: 481 ggccatctttctgggagtaggtatttgagacagacacttagaagaccaattttaatgtgc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ggccatctttctgggagtaggtatttgagacagacacttagaagaccaattttaatgtgc 269

                                                                       
Query: 541 agattataatttgtggagctttgagtgtgggttgtgacagagagggcactaaaaacgggt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 agattataatttgtggagctttgagtgtgggttgtgacagagagggcactaaaaacgggt 209

                   
Query: 601 catgcatg 608
           ||||||||
Sbjct: 208 catgcatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |