BAC Information

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BAC

Clone NameMSMg01-472B10
Chromosome9 (Build37)
Map Location 8,444,737 - 8,444,964
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
Downstream geneTrpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472B10.T7 (MSMg01no472_b10.b1)MSMg01-472B10.TJ (MSMg01no472_b10.g1)
ACCAG554704AG554705
length747746
length of high quality
(start - end)
500 (49 - 548)230 (325 - 554)
definitionCHROMAT_FILE: MSMg01no472_b10.b1 PHD_FILE: MSMg01no472_b10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:36 2005CHROMAT_FILE: MSMg01no472_b10.g1 PHD_FILE: MSMg01no472_b10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:49:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCACAGAGGATCC
GCGGAATTCTGTATTCCCCCATCAGATCTTGGGCTTTTTTTTTTTTTTTT
TTGGATGGGAGACTATTAATGACTGTTTCTATTTCTTTAGAAGATATGGG
GCTGTTTAGATTGTTAATCTGATCCTGATTTAACTTTATATATATTTATA
TATAATATATATACTTATATATAATATATATATTTATTATTAGATATTTT
CTTTATATACATTTCAAATGCTATCCCGAAAGTTCCCTACACCCTCCCTC
TGCCCTGCTCCCAACACATTCTTTCCAGCTTCTTGGCTCTGGTGTTCCCC
TGTACTGGGGCATATAAAGTTTGCAATACCAAGGGGCCTCTCTTCCCAGT
GATGGCCAACTAGGTCATCTTCTGCTACAAATGCAGCTAGAGATATGAGC
TCTAGGGGTACTGGTTAGCTCATATTGTTGTTCCAGCTATAAGGTTGCAG
ACACCTTCAGCTCCTTGGGTACTTTCTCCAGCTTCTCCATTGGGGCCCTG
TGTTCCATCTTATAGATGACTGTGAGAATCCACTTCTGTATTTGCCAGGC
ACTGGCATAATCTCCTACGAGACAGCTATTACAGGGTCCCTTCAACAAAA
TCTTTTCTTGTTTATGGCATAGAGCCTGGGCTTGGGGGGTTTATTTTGGG
AAGGGATTCCTGGGTGGGGCTCATATCCGCGACATTCCACCTTTTTT
NCCCCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTGTCAGAGTAATTCATGTAATACTCTCTTGTGACTCCAT
TGGTTCACAGCCAAAAAGAACCTTGACTACCATGGGGGTAACTGTTAATG
TCTCCGGAGACATCTTAATCATGACCAGGAGAATTCTGCTGTCTAGCAAT
GTTAAGTGCTAAACTTCTGACCCTGCACAAGATAGGCTCTACAGCAAATA
ATTATTTGTTTCAATTTTTCAATAGTGGAAGAGATAACCAAACACATTCA
CTAATGCATGGAAATTTCTTTCTCAGCTTTTTATATCTCAGTAATATTTC
AATTTTAATAGGCTTCCATGAGTAATCTCACCTAAGTCACCCACACAGAT
GGTCAATGACAATATCCCACAATGTGTTCTCAGTACTAACTCATTATCTG
TGTTTGTCTTAGATGGCATCAGTGTAAGATTACTCCCATATTAAAGACAC
TGCCACAACACCAATCAGGGTGTCTTTCACAGAGAACAGTGATGGAAGTC
TGTGGTGAAAGGGCTTCTAGGCAACCCTAATATGTGGAGGAGATTGACAT
TAGTGAGAGTAAAGGATTCCCCTACCGCACAGAAAGGATTCATCCTCTTG
TTTTTTGTTTTTTTATTCACTCTTCTAATATCTACCAAATACAATTGGAG
AACTACACCAATTTTTAAAGTTGTTCTATTTCCGGACTGGTCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_b10.g1 MSMg01no472_b10.g1 CHROMAT_FILE:
MSMg01no472_b10.g1 PHD_FILE: MSMg01no472_b10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:49:36 2005
         (230 letters)



>mm_chr9_8444537_8445164
          Length = 628

 Score =  402 bits (208), Expect = e-117
 Identities = 224/230 (97%), Gaps = 2/230 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttttatatctcagtaatatttcaattttaataggcttccatgagtaatctcaccta 60
           |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct: 428 agctttttatatctcagtaatatttcaattttaagacgcttccatgagtaatctcaccta 369

                                                                       
Query: 61  agtcacccacacagatggtcaatgacaatatcccacaatgtgttctcagtactaactcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 agtcacccacacagatggtcaatgacaatatcccacaatgtgttctcagtactaactcat 309

                                                                       
Query: 121 tatctgtgtttgtcttagatggcatcagtgtaagattactcccatattaaagacactgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||
Sbjct: 308 tatctgtgtttgtcttagatggcatcagtgtaagattactcccatattaaag--actgcc 251

                                                             
Query: 181 acaacaccaatcagggtgtctttcacagagaacagtgatggaagtctgtg 230
           |||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 250 acaacaccaagcagggtgtctttcacagagaacagtgatggaagtttgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 628
Length adjustment: 9
Effective length of query: 221
Effective length of database: 619
Effective search space:   136799
Effective search space used:   136799
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)