BAC Information

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BAC

Clone NameMSMg01-472K19
Chromosome9 (Build37)
Map Location 105,488,051 - 105,488,444
singlet/doubletsinglet
Overlap genenone
Upstream geneCpne4, Mrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981
Downstream genePik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472K19.T7 (MSMg01no472_k19.b1)MSMg01-472K19.TJ (MSMg01no472_k19.g1)
ACCAG555152AG555153
length733750
length of high quality
(start - end)
394 (68 - 461)243 (80 - 322)
definitionCHROMAT_FILE: MSMg01no472_k19.b1 PHD_FILE: MSMg01no472_k19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:23 2005CHROMAT_FILE: MSMg01no472_k19.g1 PHD_FILE: MSMg01no472_k19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GGGATCTAAAATTGCGGCGCTAAAAGACTACTATTCCAGACGATCCGNGG
AATTCTCTCTTTCCGCCCAGTTCTCACATAGTCTTCTCCTACTTCTCTCT
GGCCTGAAACCACCAAGTTTTTAAGACAGCGGGCCATTCCATTCCCAAGC
TCTATCTGCTAGGAAAACATCCATATTTTATGGTCCCATGTATCTGATTT
GCAACTTTCAGGGTACAGCTTTTGTCTGTGAAATGGTGATCATAGCATCC
ATCCTAGAGACATCCTAGGAAGTGCACAGAACGCTATACCAGAGAGCACT
CTGAGAGCAATATTTTACAGAACAAACATTGGGCATTATTAGCACAAAAA
GCACAACAGTGTCTCTAAAATTCAGAAGGGGAAGTGATTTCTACTCTATC
ATAAAACAGCCCAGGAATTACCACACTTTGCTTCTGTTCTCCAGCATTTA
CAGGCAGCATATAGAGCAGAAAGAGAAGACTACATCTGGGATCAGGAGAT
TGTGACAGGTACAGGCATTTGATACATACCTTTGGAGGCTCTCGCCCTCT
ATGTTATGTGTTCTTCAATGGATGGTAATATTTATGTTTCTCTTTCTTTT
CCTTCTTTTCGCCTTTCTTTTTTTCCTTTTGTTCTTCCCCTTTCTTGTGC
CTTCTTTGCTTTTCTTTGCTGCGGTGTTTTCGTTGCTTTGTTTGTTGCTT
GTCTGGTGTTTTTGCCTTTTTCTTTTTGTTTTT
TTCACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATCCCCAGCACCCATGTAA
TTGCTTGACATAGTATAAGGCTTTTAACCTCATCTTAGCAGGGTGGGGTA
GAGATGCCTGGGTCCTGGGAGCTCATGGCTAGCCTAGCCAAAATGGTGAG
TTCCAGGTTCTAGGAAGGACCCAGCCTCAAAAATGGAGATGGCAGGTGTG
TTAGAGAAGACAAATGCTGTCCTCCTCTGGACTCTACTGGCACTCCTTCA
CATACATACACACACATAAAACTTCTTTTCGCACACCACATGCTCATACA
CACACACACACACACATGTTTATATACACACACATACGCTCAGACACACA
CATATACACCACGCTCATACAGAAAGAAAAGATGGTTTATTTTAAATACA
CATTTCTCATCAGATGAGGGTAGGAAATCTCTTCAATGAGTCTTTGACTA
AAGTATGGTAAACAAAGGACCTTAAGATGAATAGTGGAGCCCGGACACTG
GTTCGACTTTTTTTAATTTCTCCTTGAAACTCATCTGTAAAATGTCCTTT
GTTCTTGAGATACACACTGCTGATGGGGGCGTTCTTTTTCGGTGTTTGTC
GTCCAATTAATCCTGGCCCTTTCAATTTTCCCCCTCTTCTTTTTTCTTTG
ATCATCCTTTCCCTCTTCTCCAACTGCTTTCCTGCTTTTTTGTTCCCCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_k19.b1 MSMg01no472_k19.b1 CHROMAT_FILE:
MSMg01no472_k19.b1 PHD_FILE: MSMg01no472_k19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:23 2005
         (394 letters)



>mm_chr9_105487851_105488644
          Length = 794

 Score =  731 bits (378), Expect = 0.0
 Identities = 390/398 (97%), Gaps = 8/398 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagttctcacatagtcttctcctacttctctctggcctgaaaccaccaagtttttaagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagttctcacatagtcttctcctacttctctctggcctgaaaccaccaagtttttaagac 260

                                                                       
Query: 61  agcgggccattccattcccaagctctatctgctaggaaaacatccatattttatggtccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcgggccattccattcccaagctctatctgctaggaaaacatccatattttatggtccc 320

                                                                       
Query: 121 atgtatctgatttgcaactttcagggtacagcttttgtctgtgaaatggtgatcatagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtatctgatttgcaactttcagggtacagcttttgtctgtgaaatggtgatcatagca 380

                                                                       
Query: 181 tccatcctagagacatcctaggaagtgcacagaacgctataccagagagcactctgagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tccatcctagagacatcctaggaagtgcacagaacgctataccagagagcactctgagag 440

                                                                       
Query: 241 caatatttt----acagaacaaacattgggcattattagcacaaaaagcacaacagtgtc 296
           |||||        |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caata----gcacacagaacaaacattgggcattattagcacaaaaagcacaacagtgtc 496

                                                                       
Query: 297 tctaaaattcagaaggggaagtgatttctactctatcataaaacagcccaggaattacca 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tctaaaattcagaaggggaagtgatttctactctatcataaaacagcccaggaattacca 556

                                                 
Query: 357 cactttgcttctgttctccagcatttacaggcagcata 394
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 557 cactttgcttctgttctccagcatttacaggcagcata 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 794
Length adjustment: 9
Effective length of query: 385
Effective length of database: 785
Effective search space:   302225
Effective search space used:   302225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)