BAC Information

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BAC

Clone NameMSMg01-472L16
Chromosome9 (Build37)
Map Location 121,152,734 - 121,153,129
singlet/doubletsinglet
Overlap geneUlk4
Upstream geneLOC100039898, Myrip, LOC666044, Eif1b, LOC638068, Entpd3, Rpl14, 5830454E08Rik, LOC100040010, Ctnnb1
Downstream geneTrak1, Cck, Lyzl4, Vipr1, LOC100040063, Sec22c, Deb1, Nktr, Kbtbd5, Hhatl, Ccdc13, Higd1a, Ccbp2, Cyp8b1, C730027P07Rik, C85492, LOC100040121, Snrk, Tmem16k
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472L16.T7 (MSMg01no472_l16.b1)MSMg01-472L16.TJ (MSMg01no472_l16.g1)
ACCAG555194AG555195
length766757
length of high quality
(start - end)
487 (48 - 534)170 (78 - 247)
definitionCHROMAT_FILE: MSMg01no472_l16.b1 PHD_FILE: MSMg01no472_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:27 2005CHROMAT_FILE: MSMg01no472_l16.g1 PHD_FILE: MSMg01no472_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTATTTCCCCACTTGTCCCGGGACAGCAGCTCCCTGACAGGT
GAGCCCTGTGCTTGGAGGTTCTCTGTCCTGAAGACCTCTTTTTGAATCAG
TGTCACCCTCCCCTGCCTTATTTTGGTGCTGGGAGTCTCACTGAGGGTCC
ACACGTGCTAGGCACGCACTGGCATTAGCAAGGGTTTTGCTGGGTGTGGT
GGTGCCTTTCATCCCAGCAGGGCAGACCTGGTCTACACAGGAGCTCCAGG
CCAACCAAGGCTACATATTGTGACCTTGACTCAAAGAACTGAAAATGGGA
AGAAGAAAGGGACTTATGTGGCTACCCAGCGACTCTCTGCCTGTGCAGTG
AATGTCACCACCATGTGCACACCCCAGCTGTGTGCAGTCTGTGATGTAAC
TTAACAGTCAGGGCAGGCTCAGAGTGGCTGATGTGAGCCCAGGATGGTGG
CAGCAGCAGCAACAGGGTGGATGAACCGGCAGGTCATGGGGATGAACAGG
CAAAAAGTAAACGCTTTTTTGAAGGCCTCTTGGCTGGGCTGTCTGGGGAA
GATGTCATTAAAGGGGATACTTCTTACACTAAATGAGAGAGACCCTCCCG
GATCTTTCCCCGAGGTTAATAACATATTTCGATTCCATAAACCCCCTAGT
GTACATACCTAAGTTATACATATGTTTTCCTCACCAAAAATTTCTCAATG
CTATCACTGTTTTTTT
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGCTTACAGAAGGCATGATGCAT
ATATATGAAACATACATGTATGTAAGTGTTTTAACTTAATAGAGAACAGT
AGCACATAAGCCATACATGGCAGCTGGGTGTGGTGGTAGTTCATGCCTAT
AATTCCAGGATTCGGGTGATGAGACGGGGGATCACCCTAAGTTCCAGGCC
AGCTCCGGGCTATAGGGCCCTATCTCAAAAAGCAACAGCAGGGCATGGAG
AGACGACCCAGTGATTAATTTTTCTTGCTGCTCTTGCAGAGGACCTGAGT
TCGATTCCCAGAAGCCACATGGAGGCTCAATAGCTTGTAACTTCAGCTTC
AGGGAGAGGGCATGGACCTCCATCTGCACACGCAGGCCACATGCTGTCCT
AGCATGGATGTGACAGCCACCTAGCCTGTCAGCCTTCCTCAGGACTGATG
CCTGGGCTCGGCATCACTGGTCAGAGCATCTCTGTTCATCGTGGTAAGAT
GTTCGTTAGGTCTGAGCCGACTCTAGAACAGGAGCCTGCGGGACACAGGG
TCAGGTCTTCCACCTCCCCCGTGCTGATGATCGAGTTAACCTGGTTTTTC
CCGTATTTGTCGCGTATTCGGTATTGAGAATTCTGTAATGTCCTTGGACT
CCCGCTCCTCTGAATGTTGTGAAATATTTTTTCCTTTAATATTAACTTCT
TTTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_l16.b1 MSMg01no472_l16.b1 CHROMAT_FILE:
MSMg01no472_l16.b1 PHD_FILE: MSMg01no472_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:27 2005
         (487 letters)



>mm_chr9_121152243_121153129
          Length = 887

 Score =  704 bits (364), Expect = 0.0
 Identities = 388/396 (97%), Gaps = 1/396 (0%)
 Strand = Plus / Minus

                                                                       
Query: 93  tttt-gaatcagtgtcaccctcccctgccttattttggtgctgggagtctcactgagggt 151
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 ttttggaatcagcgtcaccctcccctgccttattttggtgctgggagtctcactgagggt 828

                                                                       
Query: 152 ccacacgtgctaggcacgcactggcattagcaagggttttgctgggtgtggtggtgcctt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ccacacgtgctaggcacgcactggcattagcaagggttttgctgggtgtggtggtgcctt 768

                                                                       
Query: 212 tcatcccagcagggcagacctggtctacacaggagctccaggccaaccaaggctacatat 271
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 767 tcatcccagcagggcagacctggtctacacaggagctccaggccaaccaaggctacatag 708

                                                                       
Query: 272 tgtgaccttgactcaaagaactgaaaatgggaagaagaaagggacttatgtggctaccca 331
           || ||||||  ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 707 tgagaccttttctcaaagaactgaaaatgggaagaagaaaggaacttatgtggctaccca 648

                                                                       
Query: 332 gcgactctctgcctgtgcagtgaatgtcaccaccatgtgcacaccccagctgtgtgcagt 391
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 647 gcgactctctgcctgtgcagtgaatgtcaccaccatgtgcacaccccggctgtgtgcagt 588

                                                                       
Query: 392 ctgtgatgtaacttaacagtcagggcaggctcagagtggctgatgtgagcccaggatggt 451
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ctgtgatgtaacttaacagtcagggcaggctcagagtggctgatgtgagcccaggatggt 528

                                               
Query: 452 ggcagcagcagcaacagggtggatgaaccggcaggt 487
           ||||||||||||||||||||||||||||||||||||
Sbjct: 527 ggcagcagcagcaacagggtggatgaaccggcaggt 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)