BAC Information

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BAC

Clone NameMSMg01-472M01
Chromosome9 (Build37)
Map Location 48,058,743 - 48,218,601
singlet/doubletdoublet
Overlap geneD930028F11Rik, 4432416J03Rik
Upstream geneCadm1, LOC100043303
Downstream geneEG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-472M01.T7 (MSMg01no472_m01.b1)MSMg01-472M01.TJ (MSMg01no472_m01.g1)
ACCAG555212AG555213
length773761
length of high quality
(start - end)
200 (76 - 275)441 (75 - 515)
definitionCHROMAT_FILE: MSMg01no472_m01.b1 PHD_FILE: MSMg01no472_m01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:29 2005CHROMAT_FILE: MSMg01no472_m01.g1 PHD_FILE: MSMg01no472_m01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:50:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,218,404 - 48,218,601)(48,058,743 - 48,059,183)
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGCGCGGA
ATTCTATTNGTGCCAGAAAAACATCTTAAACAAGTTTCCTGTTTTTTAAC
ATTGTTTGAAATTGAGCAACCTTGAGAGGCCTTTTCTGGTTCATCAGGGT
AGTTGCATAATTTTTTAAAACGCATTTTCAAGAGTGACAGATTACACTCC
TTTTTTAAAAAAATTTTTTATTAGGTATTTAGCTCATTTACATTTCCAAT
GCTATACCAAAAGTCCCCCATACTCACCTACCCCCACTCCCCTACCTATC
CACTCCCCCTATTTTTTATAGTTTTACCACGGAACAGGGGGACATAAAAT
TTGCGTGTCTTTTGCCCCCCCCTCGCCAGTGATGGCGAACTACCCCCTCT
TTTGATATATATGCCCGTTAGAGTATAAAACTCCGGCATACTGCGCACTT
AACAATGTTTATTCTTCCACCCCGATTTCCTATCTCTTTTTTCTCTCCCT
GTCCTTTTTCACCTTTTTTTCATACCTCCCCCCTTATCCCCCTTCCTCTT
TTCCTTTCTTTTTTTCTTCGTCGCCCCTACCTTTTTCCTCCCCTTTCTCT
TCCTTTCTTTCTTTTTTTTCCCTCTTCCTTTTCTTCTTTCCCCCCCACCC
TTTTTTTCTTTTTGTTCATCCCCTTACCCTTACCGTTCTTTCCTCGTCGT
TACTCCCTTTTATTTTCTATTCCATCATCTTTTTATCCGCCCTCATTTTC
CCCTCTCTATCCTTTTTGTTTCT
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXATAACCCCGTTGATGAGCCTCTCACC
GTCTCATTCTGCTAGAACCTGCCTGCCTATCCCTCCTTCCCAGCCCTCTA
TGTCCCTCTCCCTTGCTGGACTCGATGACTTCTGCCTTGATGAGTCTTGG
TTCTTCTTCCTGGTCTGCCTGCCTCCCCCTCTCCTGCTGAATCATTCTAC
CGCCATCCATGAAATCATGACCACAAGGCCACCATGTCAGAAAACCGTCC
CAGATTAACCTCACATCTCTCTAACGTCCCCCACCCTTTTCCAGCGGTCT
CCAGCATCCCGCTGTGGGTATATTTGATCAGGTTATAACAAACCCCCTAG
TCTCGGACAAAACAGCCAGGGACAAAGATGATCCTTGACCCATTTAATTC
CTGGGGAATTAAAATTCTGTGCCCTGTGCTTTGCCTTCCGAGAGGTTTGC
AGAAATTATTCTGAGCAGCTACAAACAAGCAAAGGGCAGGTTCAGCGGGA
GTGGGCGGGGAAAGCTAGCACTGAAGCTCTAGATGCCTCCCAAGCTACCA
CCCAGAGTGTGACTAAACAGGATCCTTAACCTTGGGGCTGGAAAAACGGA
TTGTGTAATATTTGTTTCACGGGAACCAAATTGTTCCCCTCATTATATTT
TTTTAAATCTCTCATTTTCCACCTTTTCAGGTTTTCCTTGCTTCCCTTTT
TGCTTCTACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no472_m01.b1 MSMg01no472_m01.b1 CHROMAT_FILE:
MSMg01no472_m01.b1 PHD_FILE: MSMg01no472_m01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:29 2005
         (200 letters)



>mm_chr9_48218277_48218876
          Length = 600

 Score =  383 bits (198), Expect = e-111
 Identities = 198/198 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttaaacaagtttcctgttttttaacattgtttgaaattgagcaaccttgagaggcctttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttaaacaagtttcctgttttttaacattgtttgaaattgagcaaccttgagaggcctttt 266

                                                                       
Query: 61  ctggttcatcagggtagttgcataattttttaaaacgcattttcaagagtgacagattac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctggttcatcagggtagttgcataattttttaaaacgcattttcaagagtgacagattac 206

                                                                       
Query: 121 actccttttttaaaaaaattttttattaggtatttagctcatttacatttccaatgctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 actccttttttaaaaaaattttttattaggtatttagctcatttacatttccaatgctat 146

                             
Query: 181 accaaaagtcccccatac 198
           ||||||||||||||||||
Sbjct: 145 accaaaagtcccccatac 128


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 200
Length of database: 600
Length adjustment: 8
Effective length of query: 192
Effective length of database: 592
Effective search space:   113664
Effective search space used:   113664
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no472_m01.g1 MSMg01no472_m01.g1 CHROMAT_FILE:
MSMg01no472_m01.g1 PHD_FILE: MSMg01no472_m01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:50:29 2005
         (441 letters)



>mm_chr9_48058543_48059383
          Length = 841

 Score =  853 bits (441), Expect = 0.0
 Identities = 441/441 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataaccccgttgatgagcctctcaccgtctcattctgctagaacctgcctgcctatccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataaccccgttgatgagcctctcaccgtctcattctgctagaacctgcctgcctatccct 260

                                                                       
Query: 61  ccttcccagccctctatgtccctctcccttgctggactcgatgacttctgccttgatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccttcccagccctctatgtccctctcccttgctggactcgatgacttctgccttgatgag 320

                                                                       
Query: 121 tcttggttcttcttcctggtctgcctgcctccccctctcctgctgaatcattctaccgcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttggttcttcttcctggtctgcctgcctccccctctcctgctgaatcattctaccgcc 380

                                                                       
Query: 181 atccatgaaatcatgaccacaaggccaccatgtcagaaaaccgtcccagattaacctcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atccatgaaatcatgaccacaaggccaccatgtcagaaaaccgtcccagattaacctcac 440

                                                                       
Query: 241 atctctctaacgtcccccacccttttccagcggtctccagcatcccgctgtgggtatatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atctctctaacgtcccccacccttttccagcggtctccagcatcccgctgtgggtatatt 500

                                                                       
Query: 301 tgatcaggttataacaaaccccctagtctcggacaaaacagccagggacaaagatgatcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgatcaggttataacaaaccccctagtctcggacaaaacagccagggacaaagatgatcc 560

                                                                       
Query: 361 ttgacccatttaattcctggggaattaaaattctgtgccctgtgctttgccttccgagag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgacccatttaattcctggggaattaaaattctgtgccctgtgctttgccttccgagag 620

                                
Query: 421 gtttgcagaaattattctgag 441
           |||||||||||||||||||||
Sbjct: 621 gtttgcagaaattattctgag 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 841
Length adjustment: 9
Effective length of query: 432
Effective length of database: 832
Effective search space:   359424
Effective search space used:   359424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)