Query= MSMg01no474_j17.b1 MSMg01no474_j17.b1 CHROMAT_FILE:
MSMg01no474_j17.b1 PHD_FILE: MSMg01no474_j17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:07 2005
(529 letters)
>mm_chr9_43585341_43586269
Length = 929
Score = 969 bits (501), Expect = 0.0
Identities = 522/533 (97%), Gaps = 8/533 (1%)
Strand = Plus / Plus
Query: 1 aatggtaatgaaacctagcacccaggagttttgagaatgaaacaaattagcctccatgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatggtaatgaaacctagcacccaggagttttgagaatgaaacaaattagcctccatgag 260
Query: 61 cattcagactttggactggcacagtgtctgacacacacatgctaactgtacttgccatct 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cattcagactttggactggcacagtgtctaacacacacatgctaactgtacttgccatct 320
Query: 121 ccaggagaggcccagcaggaaacatgtccctcttgtgtcctctcagggacacacaggctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccaggagaggcccagcaggaaacatgtccctcttgtgtcctctcagggacacacaggctt 380
Query: 181 ctgttgctcaggttgttgcccaaccttagggtgttcagagggggacagggccgctctgcg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgttgctcaggttgttgcccaaccttagggtgttcagagggggacagggccgctctgcg 440
Query: 241 c----tttttcagaagggcaaggggatgggaaggagagttagtcaagggaagcaggtggc 296
| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caggg----tcagaaggacaaggggatgggaaggagagttagtcaagggaagcaggtggc 496
Query: 297 cgcagaagccggctacatctccgcagctgggcgccatgccccgtgcctacgtgctggctc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 cgcagaagccggctacatctccgcagctgggcgccatgccccgtgcctacgtgctggctc 556
Query: 357 cctctgtgaggcaggatggagaacaggccctggcatgccaggccctaccagtgactcctg 416
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 557 cctctgtgaggcaggatggagaacaggccctggcatgccagcccctaccagtgactcctg 616
Query: 417 aaaccttgacaagtctgagctagaagcaggcctgggcgaggctcctgatagactcatgtt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aaaccttgacaagtctgagctagaagcaggcctgggcgaggctcctgatagactcatgtt 676
Query: 477 gggcagagggatggtcggtgtgggaaagaccccacacttgaaactgtgacgct 529
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gggcagagggatggtcggtgtgggaaagaccccacacttgaaactgtgacgct 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no474_j17.g1 MSMg01no474_j17.g1 CHROMAT_FILE:
MSMg01no474_j17.g1 PHD_FILE: MSMg01no474_j17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:07 2005
(240 letters)
>mm_chr9_43719474_43720113
Length = 640
Score = 426 bits (220), Expect = e-124
Identities = 235/240 (97%)
Strand = Plus / Minus
Query: 1 acagtagttcttgtctttcagtctggcatacactgggatttcagtgtgggccactatgcc 60
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 440 acagtaattcttgtctttcagtctggcataccctgggatttcagtgtgggccactatgcc 381
Query: 61 cagctttaaagtgagtagcttgtatgaacagatgtctatttgactcgggttctagaggct 120
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 380 cagctttaaagtgagtagcttgtatgaacagatgtctatttgactcaggttctagaggct 321
Query: 121 aagaggcccaaggttagggggctgcctctggtcagggctttcagctgcattgctgcatgg 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 320 aagaggcccaaggttagggggctgcctctggtcagggctttcagcagcattgctgcatgg 261
Query: 181 tggatgatatcatatgacacatgacgaaagagagagggttggaaaggaggaagggaggga 240
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 260 tggatgatatcatatgacacatgacgaaagagagagggctggaaaggaggaagggaggga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
