BAC Information

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BAC

Clone NameMSMg01-474L13
Chromosome9 (Build37)
Map Location 30,346,104 - 30,346,343
singlet/doubletsinglet
Overlap genenone
Upstream geneHnt, Snx19, LOC666478
Downstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474L13.T7 (MSMg01no474_l13.b1)MSMg01-474L13.TJ (MSMg01no474_l13.g1)
ACCAG556716AG556717
length718726
length of high quality
(start - end)
316 (329 - 644)240 (75 - 314)
definitionCHROMAT_FILE: MSMg01no474_l13.b1 PHD_FILE: MSMg01no474_l13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:16 2005CHROMAT_FILE: MSMg01no474_l13.g1 PHD_FILE: MSMg01no474_l13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCATAACAGGG
CGGAANTCAACGCTCTTACAGAAACATAATAAAAGCAATCTACAGCAAAA
TAGTAGCCAACATCAAAGTAAATGGTCAGAAGCTGGACCAATCCCATTAA
AATCAGGGACTAGACAAGGCTGCCGACTTTCTCCCTACCTATTCAACATT
GTACTGGAATTCCTAGCCAGAGCAATTCAACAACAAAAGCAGATCAAGGG
GATTCTTATTGGAAAAGAAGAAGTCAAAATATCACTTTTTGCCCATGATA
TGATAGTATATATAAGTGACCNCTAAAATTCCACCAGAGAACTCCTAAAC
CTGATAAACAGCTTCAGCGAAGTAGCTGGATATAAAATTAACTCAAACAA
GTCAATGGCCTTTCTCTACACAAAGAATAAACACGCTGAGAAAGAAATTA
GGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTGGC
GTGACTCTAAGGAAGTGAAAGATCTGTATGATAAGAATTTCAAGTCTCTG
AAGAAAGAAATTAAAGAAGATCTCAGAAGGTGGAAAGATATCCAATGCTC
ATGGATTGGAAGGATCAATATAGTAAAAATGTCTATCTTGCCAAAAGCAA
TCTATTTATTCTATGCAATCCTCATAAAATTCCAACTCAACTCTTCAACG
GATTAAAAAGAGCAATCG
NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTACAGTCTGGGAGCCAGAAAAGAATC
TTGGCCCCTGCCAGGGACCCTGAGAGTCTCAGGCAGAGTAGGGAAAGGAC
CTCACCTACCTGCTTGCTTTTCTCTCTTGACAGTGACTCTAGGGCAGGAC
CATGTAGAATATTGCTGCCAAGGGATTTGGAGAACTGCAGCCTCCAGGGA
TCTGTCTGGTGAATCAGTAAAGATCTGGGGACCAAGGGGAATGGAGGGGC
CAGCGATTAGGTCCACTATTGTTCCCAAAATATACAACACTGTGGCAGAT
CTGGGCTAGCCCACATAACTATTTTGAATTTCAGGAGATTGCTACCACCT
TCTACTTCCTCCATCTTGGCCCATGTCCCTTTATGGCTGTCTTTACCTTC
TACCTCTGCCCACTTCAAGATTTCTTGGTTAATAAAGAAGAGAGTCCTAG
TGTTCCAGGCTATGGGCTTGCTTCTCAGCCTCAGAAGAGGGCTTCTTGTT
GTGTGTCCAGAGAAATACCGGGGGTGGGGGGTGGAGGNNANNNTNNTTTN
GNNNTTTTTTNNTNNGTTTNTTTTNGTTTTTTTTTCCTNTGTTTTTTTTT
TTTTTTTTTTTTCGNTTTTGGTGGTTTGGTGGTTTCCGGTTTNGTTTTTC
TGTTGTTGTTCTCTTCTCTCCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_l13.g1 MSMg01no474_l13.g1 CHROMAT_FILE:
MSMg01no474_l13.g1 PHD_FILE: MSMg01no474_l13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:16 2005
         (240 letters)



>mm_chr9_30345904_30346543
          Length = 640

 Score =  456 bits (236), Expect = e-133
 Identities = 239/240 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tacagtctgggagccagaaaagaatcttggcccctgccagggaccctgagagtctcaggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tacagtctgggagccagaaaagaatcttggcccctgccagggaccctgagagtctcaggc 381

                                                                       
Query: 61  agagtagggaaaggacctcacctacctgcttgcttttctctcttgacagtgactctaggg 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agagtagggaaaggacctcgcctacctgcttgcttttctctcttgacagtgactctaggg 321

                                                                       
Query: 121 caggaccatgtagaatattgctgccaagggatttggagaactgcagcctccagggatctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 caggaccatgtagaatattgctgccaagggatttggagaactgcagcctccagggatctg 261

                                                                       
Query: 181 tctggtgaatcagtaaagatctggggaccaaggggaatggaggggccagcgattaggtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tctggtgaatcagtaaagatctggggaccaaggggaatggaggggccagcgattaggtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)