NCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACAGCCTTTACGTCTCAAGATCTCCATGCCAAGATCCAGGTCA
GAAACTTGTATCTCCAGCCTCCAGATTAGGATCACTGGTGAGCCTTCCAG
TTCTGGATTGTAGTTCATTCCAGTTTTAGTCAAGTTGATAACCAGGAATA
GCCATTACACATTACACATTTCCTTAATTAGATAGTCCTGATTTTCTTAC
CTTAATTGTGACTTTGAGAATACATTTTCATTGTTTGTATTTTTTGCAAA
CTTCTACCCTCTGAGTTTTGTCTTCTCTTACTCAGCTTTTCCATGTTCCT
GTTTCTCTCTAGATTTTCTTCCATGTCCGACATAATGGTTGCTTCGTTTT
AAAATCTACTGTAAAAAGTCAGTGATCACTCTGACATTCGGACACTTCTA
TGCATTTCATTTGATGTTGCCATTTCACAGCAACCCACCACAGCAGATAG
CACTGAGATCCCTTTGTTAGACATGAGAAATGAGACTTTATCCCTGTGTC
ACAGAGCTACTAAACTGCAGATCAAGGGCTTAACCCCAGCTTGGATGACT
GAAACCCCAAGTTCCATACCTAACTTTACTCTTCTTTCCCATGAAAAATG
GCTTGGGAATGTAAAAACCGGCTGAAAAACTCCCCACGGGCCCTAAAGAG
CCCATTGGTATGATTTCTTTGCTTTGAACAAGGAATATTACTTTTATTCT
CTTGGCGGTN

CACATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXANAAAAATCTTAGTAAGACTTTCCCGAAATAA
CACTTAAATTCAATATTTCAAAGTCACCGCGGGGTGGGGGGTGTGNNNNN
NNNNNNNNNNNNTTTTTTTTTTGTGGGGGGTGGTTTTTGTTTTTCTTGTT
TCTTTTTTTTTTGTTGTTTGTTTTTTTGTTNGTTTTGGGTGGGGGGGGGG
TTTTTTTTTGGGGGGGGGGGGGGGNGNNGCGGGGGCGCGTCCCCCCCCCC
CCCGNCCCCCCCCCCTTTTCGCTCCCTTGCCCCCCCCGGCCCCCCCCCCC
GCGNGTTTTTCCCCCCCCCCCCCCCCCTCCGTCCCCCCCCCTCCGCCTCC
CCCTTCCTCTCTCCCCCCCCCCCCCCCCTCTCTCTTCCTCCCCTCCCCCC
TCCCTCTCCCCCCCGCCCCCCCCCCCACTCCCCCCTCCCCCCTCCTCCCC
CCCCCCCCCCTTCCCCCCCCCCTCCTCCCCCCCCCCCCCCCCCCCCCCCC
CCTCCCTCCCCCCCCTCCCTCCCCCTCCCCCCCTCCCCCCCCCCCCCTCT
CCCTCCCCCCTCCTCACCCTCCACCCCACCCACCTCCCCCCTTTTTTTTT
TTTCTCCCCCCTCCCTCCCCCCCCCCCCCCCCCCCCGCCCTCCCCCAATC
AACAACCACCACCCACCCTAACAAACCCAAATCCACCATACCCACACAAA
AATAACACTCTACAG

Query= MSMg01no474_m18.b1 MSMg01no474_m18.b1 CHROMAT_FILE:
MSMg01no474_m18.b1 PHD_FILE: MSMg01no474_m18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:22 2005
         (457 letters)



>mm_chr9_52076512_52077371
          Length = 860

 Score =  828 bits (428), Expect = 0.0
 Identities = 451/460 (98%), Gaps = 3/460 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcaagatctccatgccaagatccaggtcagaaacttgtatctccagcctccagattagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 ctcaagatctccatgccaagatccaggtcagaaacttgtatctccagcctccagattagg 740

                                                                       
Query: 61  atcactggtgagccttccagttctggattgtagttcattccagttttagtcaagttgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 atcactggtgagccttccagttctggattgtagttcattccagttttagtcaagttgata 680

                                                                       
Query: 121 accaggaatagccattacacattacacatttccttaattagatagtcctgattttcttac 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 679 accaggaatagccattacacattacacatttcctcaattagatagtcctgattttcttac 620

                                                                       
Query: 181 cttaattgtgactttgagaatacattttcattgtttgtattttttgcaaacttctaccct 240
           |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct: 619 cttaattgtgactttgagaatacattctcattgtttgtatattttgcaaacttctaccct 560

                                                                       
Query: 241 ctgagttttgtcttctcttactcagcttttccatgttcctgtttctctctagattttctt 300
           |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 559 ctgagttttgccttctcttactcagcttttccatgttcctgtttctctctagattttcct 500

                                                                       
Query: 301 ccatgtccgacataatggttgcttcgttttaaaatctactgtaaaaagtcagtgatcact 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 499 ccatgtccgacataatggttgcttcgttttaaaatctactgtaaaaagtcagtgattact 440

                                                                       
Query: 361 ctgacattc---ggacacttctatgcatttcatttgatgttgccatttcacagcaaccca 417
           |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ctgacattcatcggacacttctatgcatttcatttgatgttgccatttcacagcaaccca 380

                                                   
Query: 418 ccacagcagatagcactgagatccctttgttagacatgag 457
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ccacagcagatagcactgagatccctttgttagacatgag 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 457
Length of database: 860
Length adjustment: 10
Effective length of query: 447
Effective length of database: 850
Effective search space:   379950
Effective search space used:   379950
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)