BAC Information

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BAC

Clone NameMSMg01-474O05
Chromosome9 (Build37)
Map Location 50,374,650 - 50,374,875
singlet/doubletsinglet
Overlap geneIl18
Upstream geneNcam1, EG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12
Downstream geneSdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1, 2310030G06Rik, Hspb2, Cryab, 1110032A03Rik, D630004A14Rik, Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-474O05.T7 (MSMg01no474_o05.b1)MSMg01-474O05.TJ (MSMg01no474_o05.g1)
ACCAG556843AG556844
length760767
length of high quality
(start - end)
184 (122 - 305)241 (71 - 311)
definitionCHROMAT_FILE: MSMg01no474_o05.b1 PHD_FILE: MSMg01no474_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:29 2005CHROMAT_FILE: MSMg01no474_o05.g1 PHD_FILE: MSMg01no474_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCATACAAATCCGCGGAA
NNCACGAATTGCTAATAAAGTGAGNAGAGAAACAGAGAGAAGAGGGACCA
CAATACATAAAATTTAAACCCCCAAAGGAAAGCAGCTCTGTCGACTGAGT
TTGAGGCCTGTAGTGAGAAATTTTGTTTCTTCAAAAACCCAGTTACGTTT
CTGTTTTAATCCCAGGTGTGGGGTACGGGGCTGCTTCAGGTTGTTTTTTG
CAGCTGACTATGATTGTCTCGTGCTTTAGGAGGGGCGTGATTGTGCCAGC
TGCAGATATCTCATGCTTGGAATTCTGGGGACTCCTGAGAGGGTATGAGA
GATATATCCAGCACAGGGTCTTGCAGAGGCTGCTGCCCCGCTGCTGCTGG
TCCCTGCTATTGCTGCTCCCTGCTGTTGCGTTTTCTGCTTTTGCTATTGC
TGGTTTTCTGTATTGCTATATGTATCTCCTGATGATGATACTGGACTTGC
CCTTAGTATCCTGACACCTCTTAGTCTTCTTGTTGTAGTCTTTAGACATC
TATGCCCCTCTTTCCCCTCTATAATTTCTTTTCTCTCTCCTCCCCTACAC
CATTGCTTGTGCTCTCTCAATATTTATTTATCTTAAACGAAATTACTCTT
TTTTTTTTTTTTTTCTTTCCCAATTTTCATTCTTTTATTATTTTCATACT
TTTCTTTATTCCTCTCCTATGTCTTATTAAGACCACCCTCTCCACAAGTA
CCTTATAACT
ATACTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCAAGCCTGTGAGCTGCACTTGACCTCTTTT
TTTAATTAAGCCTATATTTAACAGTTGATTAAATATACCTGTCATTAACT
ATTTAATTTCCTGTTGTGTTCTACTCCTATCCCTTCTACATTCCACATAC
ATACATTTGTAAGATGGAGCAATTGTCAAGGGTTAACTGACATGTCTAAC
TGAAATATCACCTGGCTAGTGAGATGGCTCAGCAGGAGCCAGCAGGGGTC
AATGCCTGTCTTTCCTGATATTCACACATGGATCCCTTATAAAGATGGAA
GATGTCCCTGACTTCCACACACATGCTATCATAGACTCATATACACACAC
TAAATACACGTGTCTTTGGTTTGGTTTAGTTTGGCTGGTTGGGTTGTTTG
CTATCCACTTCCCAACTTTCTCCTTCTTCATCCTTTCTCCTCATATCTAT
TTTTCTTCTTTAACTGACATTCTCAATTTTTACACTCCCATTACTTCCTA
TCTCCTTTTTCTAATTTACATTCTTATCCCCTTTTCCATATTCCTTCTAT
CCTTCTTTTTTTTCCCTTTTTTCTTTCCCTTTAATTATCTCCCCCTACAC
CATCCTATTTCTTTTTTTGCTTCTACCTCATTATTTCAATCTTCAATATT
TTATTATATCTTTCATTTCTTTTCTATCTATCTATCCATTTCTCTTTTTT
TTCCTTCTCTCCTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no474_o05.g1 MSMg01no474_o05.g1 CHROMAT_FILE:
MSMg01no474_o05.g1 PHD_FILE: MSMg01no474_o05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:29 2005
         (241 letters)



>mm_chr9_50374450_50375090
          Length = 641

 Score =  406 bits (210), Expect = e-118
 Identities = 222/226 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcctgtgagctgcacttgacctctttttttaattaagcctatatttaacagttgatt 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcctgtgagctgcacttgacctttttttttaattaagcctatatttaacagttgatt 260

                                                                       
Query: 61  aaatatacctgtcattaactatttaatttcctgttgtgttctactcctatcccttctaca 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 aaatatacctgtcattaactatttaatttcctgttgtgttctacccctatcccttctaca 320

                                                                       
Query: 121 ttccacatacatacatttgtaagatggagcaattgtcaagggttaactgacatgtctaac 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 321 ttccacatacatacatttgtaagatggagcaattgtcaagggttaactgacatgccaaac 380

                                                         
Query: 181 tgaaatatcacctggctagtgagatggctcagcaggagccagcagg 226
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgaaatatcacctggctagtgagatggctcagcaggagccagcagg 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)