BAC Information

Click to search

BAC

Clone NameMSMg01-475E07
Chromosome9 (Build37)
Map Location 58,437,225 - 58,437,630
singlet/doubletsinglet
Overlap geneNptn
Upstream geneUlk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik, Cd276
Downstream gene2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475E07.T7 (MSMg01no475_e07.b1)MSMg01-475E07.TJ (MSMg01no475_e07.g1)
ACCAG557134AG557135
length841745
length of high quality
(start - end)
113 (76 - 188)436 (81 - 516)
definitionCHROMAT_FILE: MSMg01no475_e07.b1 PHD_FILE: MSMg01no475_e07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:59 2005CHROMAT_FILE: MSMg01no475_e07.g1 PHD_FILE: MSMg01no475_e07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:53:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCCCCCTTATXXXXXXXXXXXXXXXXXXXXXXCTACATCAAGACCTCC
GCGGAATTCAGCCTTTTCCGGCTGCCTGTTAGTGTCACTGAGGGCAGTGT
GTGCTGGCCTGAGGCTGTCAGGAGAACCGGCTGGAGTAGAGTGAATACCG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCTCCCCCTCTCCCCC
CCCCCCTTCTTCTTTCCCTTTTCCCCCCCCCCCTCCCCTTTTTCCCCTTC
CTTCTTTTTTTCTTCTCCCCCCCCCTCTCTTTCTTTCCCCTTCTCCTCTC
TTCCCTTCCTCCCCCCCTCCCTTTTTCCTCCCTTTCCCCCCACCACCCCT
CATATATCCTCACTCCTTTTTTTCCTCCCCCCTCTTCCCCCCTCCCCTCT
TTCTTCTTTTTCCCTATTTCCCCTTCCCCCCCCCCCTTTTTTTCTTTTCC
CCTCCCTCTTTCTCCTCCCCTCCCCTCCCCCCCTTTTTTTTTTTCTCCTC
CCTCTTTTCTCCTCTCCTCTCCTCTCCCCCTCCTCTTTTTTTCCCCTTCT
CCCCTCTTCTTCCTCCTTTCTCTTATTCCTTCCCCCCTCTTCTCTTTCCC
CCCCTCTTTTTCCCCCCCCCCCCCCCCCTTTTCCTTCTCCCCCCCCTCTT
CTTCTTTCCCTTTTCCTCCCCCCCCCCCCCCCACTTTTTCTTCTTTCTCT
CTTCCCTTTTTTTCCCCTTCTCTCTCCCCCCTCTTTTCTTTCCTTTTCTC
TTTCTCCCTTCTATTTCTACTTCCCCTTCTTCCTCCCCACCCCCTTTCCC
TCCCCCCTTTCTTTTCCCCTCTTTTTCTTTTCTTTTCTATN
NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCCTGGGAACCCACTTGG
TGTAAGGAGAGAATCAATTTCTACAAGTTGTTTTCTTCCCCCCGCCCCCC
CACCAACCCCCCCGCCTTGGTTTTTAGAGACAGGGTTTCTCTGTATAGCC
CTGGCTGTCCTGGAACTCACTCTGTAAACCAGGTTGGCCTCGAACTGAGA
AATCCGCCTGTCTCTGCCTCCCAAGTGCTGGGATTAAAGGCTGCACCACC
ACTGCCTGGCCTACAAGTTGTTTTCTGACCTCAAAACAAACACTGAGGCG
CATTGAGGGCCCATATATGCACTCAACATATACATGTATACATGTGTACA
TGTACACAAAATATTTTTTTGTTTTATGTGTTGTTTCTACGGGCTATTAA
CTTATTAATATCCTCAGATTTAATTCAGATATTTGGGTTGCTTTTTTTAC
CCACAACAAAAAGATTTGAAATGCATTTTAGATATATAGGTTTAAAAAAC
TTCTATACCGAAACAGATTTCCTTCTAAAGATAGCTTTTTTTAAGGATTT
ATATAATTTACAATTTTTAAATTATAAAGCGGGTTTTTTACTTGCCCCTC
CCTTAATCTAAACAGTGTTTCTCCCTACCGGGCAAACCCTCAACCCTTCT
TTCCCCTCCATGGCTTGCTATTCCGTTCGAACTCGTATTCCACTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_e07.g1 MSMg01no475_e07.g1 CHROMAT_FILE:
MSMg01no475_e07.g1 PHD_FILE: MSMg01no475_e07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:53:59 2005
         (436 letters)



>mm_chr9_58436795_58437630
          Length = 836

 Score =  735 bits (380), Expect = 0.0
 Identities = 401/408 (98%), Gaps = 4/408 (0%)
 Strand = Plus / Minus

                                                                       
Query: 31  gaatcaatttctacaagttgttttcttccccccgc-ccccccaccaacccccccgccttg 89
           ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 836 gaatcaatttctacaagttgttttcttcccccc-caccccccaccaa-ccccccgccttg 779

                                                                       
Query: 90  gttttt-agagacagggtttctctgtatagccctggctgtcctggaactcactctgtaaa 148
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 gtttttaagagacagggtttctctgtatagccctggctgtcctggaactcactctgtaaa 719

                                                                       
Query: 149 ccaggttggcctcgaactgagaaatccgcctgtctctgcctcccaagtgctgggattaaa 208
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ccaggttggcctcgaactgagaaatccgcctgtctctgcctcccaagtgctgggattaaa 659

                                                                       
Query: 209 ggctgcaccaccactgcctggcctacaagttgttttctgacctcaaaacaaacactgagg 268
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 658 ggctgcaccaccactgcctggcctacaagttgctttctgacctcaaaacaaacactgagg 599

                                                                       
Query: 269 cgcattgagggcccatatatgcactcaacatatacatgtatacatgtgtacatgtacaca 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cgcattgagggcccatatatgcactcaacatatacatgtatacatgtgtacatgtacaca 539

                                                                       
Query: 329 aaatatttttttgttttatgtgttgtttctacgggctattaacttattaatatcctcaga 388
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 538 aaatatttttttgttttatgtgttgtttctacgggctattaacttagtaatatcctcaga 479

                                                           
Query: 389 tttaattcagatatttgggttgctttttttacccacaacaaaaagatt 436
           | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tataattcagatatttgggttgctttttttacccacaacaaaaagatt 431


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)