Query= MSMg01no475_e14.b1 MSMg01no475_e14.b1 CHROMAT_FILE:
MSMg01no475_e14.b1 PHD_FILE: MSMg01no475_e14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:01 2005
(492 letters)
>mm_chr9_116576343_116577233
Length = 891
Score = 781 bits (404), Expect = 0.0
Identities = 476/514 (92%), Gaps = 25/514 (4%)
Strand = Plus / Minus
Query: 1 gcagtgctcacagaggccagtaaagggtagaggatccacaggcacagaagttatacatga 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 767 gcagtgctcacagaggccagtaaagggcagaggatccacaggcacagaagttatacatga 708
Query: 61 ttgtgaatggctatgtgaatgctaggagctgaactcaagttctttgcaaaagaaaatgat 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ttgtgaacggctatgtgaatgctaggagctgaactcaagttctttgcaaaagaaaatgat 648
Query: 121 ggtgctcttaagtacccacccgtctttcctgcccctctgacctcatttttattagtttgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ggtgctcttaagtacccacccgtctttcctgcccctctgacctcatttttattagtttgg 588
Query: 181 acacagaaatgctattgccaggaatttaggttcacttcattaaatagtaacatgaattat 240
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 587 acacagaaatgctattgccaggaacttaggttcacttcattaaatagtaacatgaattat 528
Query: 241 aaattatttc-tttgtttcagtataaaaatattataaattccagtagtgtaatatataaa 299
|||||||||| | | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 527 aaattatttcactag--acagtataaaaatattataaattccagtagtgtaatgtataaa 470
Query: 300 tcaatcacagctggggaaaaataacttttgcattaggaaaatcatcattaaggctgctga 359
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 469 tcaatcacagctggggaaaaataacttttgcattaggaaaatcatcattaacactgctga 410
Query: 360 atgtataataacactctacccatgaagatggagggtgttc-------------------- 399
||| |||| |||||| ||||| ||||||||||||||||||
Sbjct: 409 atgaataacaacactatacccttgaagatggagggtgttcttgttgttgttgttgttgtt 350
Query: 400 -ttgttgttgttgttaacttccacctttcaaatagctctccaaaggcatcttggagaaca 458
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gttgttgttgttgttaacttccacctttcaaatagctctccaaaggcatcttggagaaca 290
Query: 459 catttcctgtttttttgaggcccttggcttcaaa 492
||||||||| ||||||||||||||||||||||||
Sbjct: 289 catttcctg-ttttttgaggcccttggcttcaaa 257
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_e14.g1 MSMg01no475_e14.g1 CHROMAT_FILE:
MSMg01no475_e14.g1 PHD_FILE: MSMg01no475_e14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:01 2005
(358 letters)
>mm_chr9_116381516_116382274
Length = 759
Score = 640 bits (331), Expect = 0.0
Identities = 352/359 (98%), Gaps = 1/359 (0%)
Strand = Plus / Plus
Query: 1 ttattatggccatttttggatataggtaggccatagaatttctttatggatgactactag 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttattatggccatttttggatacaggtaggccatagaatttctttatggatgactactag 260
Query: 61 caagaatggaaagcaaaggtgaaattgatatctttttagaatgcccagtgctactttcta 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taagaatggaaagcaaaggtgaaattgatatctttttagaatgcccagtgctactttcta 320
Query: 121 ttgtctcccacagtgcaataaaatgtatcttctctttgatacatagtgactgcctgggct 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttgtctcccacagtgcaataaaatgtatctgctctttgatacatagtgactgcctgggct 380
Query: 181 aacaggtaattgctctttacctttcccccctctcatttcatcttcatagctgtcac-agg 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 aacaggcaattgctctttacctttcccccctctcatttcatcttcatagctgtcaccagg 440
Query: 240 gtctcctgccttatccactgactgcaagtgctttaaacatcagcctgagttacttcatta 299
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 gtttcctgccttatccactgactgcaagtgctttaaacatcagcctgagctacttcatta 500
Query: 300 gttatgttttctcccagccagaatcagatcctcagggctggagagatggctcagcagtt 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttatgttttctcccagccagaatcagatcctcagggctggagagatggctcagcagtt 559
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 759
Length adjustment: 9
Effective length of query: 349
Effective length of database: 750
Effective search space: 261750
Effective search space used: 261750
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
