BAC Information

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BAC

Clone NameMSMg01-475E15
Chromosome9 (Build37)
Map Location 93,746,575 - 93,747,100
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040114, LOC674371
Downstream geneLOC384967, EG384968, 1190002N15Rik, EG667601, Slc9a9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475E15.T7 (MSMg01no475_e15.b1)MSMg01-475E15.TJ (MSMg01no475_e15.g1)
ACCAG557150AG557151
length761737
length of high quality
(start - end)
526 (73 - 598)418 (159 - 576)
definitionCHROMAT_FILE: MSMg01no475_e15.b1 PHD_FILE: MSMg01no475_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:01 2005CHROMAT_FILE: MSMg01no475_e15.g1 PHD_FILE: MSMg01no475_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAATCCGCGG
AATTCATACATAATTCCTGCACATTTATTCAATTTCTCTAGTTGTAATGA
ATGGAGGTTCAAATAAGCTACTTCTGCATTTGAGTGAAAATGATAAGATA
TTCTTATTTCAAATCAGATTTAAAACTCAGATGCAACAGAACAGAAATGT
TATTGTTAGAAATTCATTAAAGTGGAACTAGCAGTCCATTCTTCATTGAT
TTAAGTTAAGAATTTCCGAATGTTCTCTTTTAAGTTTCCACGGTATCTCT
GGACTGCCAAGTATAAGGCCCCTTTTGTACTTTTCTTCACGGTTTGTGGC
TATCTGACTTCCTGACATTCTCACCTTGGATTTTACACTCAAAGTTTTGT
CTGGATTTCGGTGTTTAAACTTCTCTTGTCTGTGAACCGTTGCTCAAATT
GGACCTTTACTCTTTTCCTTTAAGAGCCAGGAAAAGTTATGGCCAATGCC
AGTTATTTTTATTGCTTTGGTTATTAAGGAAACATGTTTCTCTACCAATA
CCTATCTTTTCACTTTCTATTTACCAAGAGTTGGCTTTCTTTCATGAATT
ATCACCTTGCAATCTGTGACAGCCACTCTATCTCGACTGGTACTCAGTCT
CTCTCCGGAATCCCAATATGCCTTTGCGCCTTGGTTGCCTTGTAAGCTTT
CTGGCATCATTTCATTTCCATCGCTCTTACTTTCTTTTTAAAAAAAAGCT
GTATGTTTTTT
NNCCGATGAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAACAGACTGGGAGGAA
GAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCAGGTAAAGTGCTAGC
TAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGATT
GGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATGCGGAGCCCCCACCC
TGCGTAGTGCGTCAGCAATGCGCAGAGAGGCAATGCGCAGAGAGGCAGTG
CGCAGAGAGGCAGTGCGCAGAGAGACAGTGCGCAGAGAGACAGTGCGCAG
AGAGGCAGTGCGCAGACTCATTCATTCCCAGAGAGGAACAAAGAAAAATA
CAACAGGCATTTCCAGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGC
TCCGGTAGAATACGTACAGATTAAAGAACTCGCCGAGTCGGTCTGTAAAT
ATGGAACCAATGCTAATTTTACCTTGGTACAGTTAGACAGGCTCGCCGGC
ATAGCACTAACTCCTGCCGACTGGCAAACGGCTGTAAAAGCCGCTCTCCC
TAGTATGGGCAAATATATAATATGGAGAGCTCTTTGTCCTGAAACCTGCC
CATCGCCATGTTCTAACAAACGTCAATGGCTCTTGACCCCCTTACCCTCA
CACACCGGACCTTTTCGTATTGTATTCCTGCCCCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_e15.b1 MSMg01no475_e15.b1 CHROMAT_FILE:
MSMg01no475_e15.b1 PHD_FILE: MSMg01no475_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:01 2005
         (526 letters)



>mm_chr9_93746375_93747300
          Length = 926

 Score =  978 bits (506), Expect = 0.0
 Identities = 521/526 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttattcaatttctctagttgtaatgaatggaggttcaaataagctacttctgcatttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 atttattcaatttctctagttgtaatgaatggaggttcaaataagctacttctgcatttg 667

                                                                       
Query: 61  agtgaaaatgataagatattcttatttcaaatcagatttaaaactcagatgcaacagaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 agtgaaaatgataagatattcttatttcaaatcagatttaaaactcagatgcaacagaac 607

                                                                       
Query: 121 agaaatgttattgttagaaattcattaaagtggaactagcagtccattcttcattgattt 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 agaaatgttattgttaggaattcattaaagtggaactagcagtccattcttcattgattt 547

                                                                       
Query: 181 aagttaagaatttccgaatgttctcttttaagtttccacggtatctctggactgccaagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 aagttaagaatttccgaatgttctcttttaagtttccacggtatctctggactgccaagt 487

                                                                       
Query: 241 ataaggccccttttgtacttttcttcacggtttgtggctatctgacttcctgacattctc 300
           |||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ataaggccccattgggacttttcttcacggtttgtggctatctgacttcctgacattctc 427

                                                                       
Query: 301 accttggattttacactcaaagttttgtctggatttcggtgtttaaacttctcttgtctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 accttggattttacactcaaagttttgtctggatttcggtgtttaaacttctcttgtctg 367

                                                                       
Query: 361 tgaaccgttgctcaaattggacctttactcttttcctttaagagccaggaaaagttatgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgaaccgttgctcaaattggacctttactcttttcctttaagagccaggaaaagttatgg 307

                                                                       
Query: 421 ccaatgccagttatttttattgctttggttattaaggaaacatgtttctctaccaatacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 ccaatgccagttatttttattgctttggttattaaggaaacatgtttctctaccaatacc 247

                                                         
Query: 481 tatcttttcactttctatttaccaagagttggctttctttcatgaa 526
           |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 246 tatcttttcactttctatttacaaagagttggctttctttcatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 526
Length of database: 926
Length adjustment: 10
Effective length of query: 516
Effective length of database: 916
Effective search space:   472656
Effective search space used:   472656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)