GCCCCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGNAAAATC
CGCGGAATTCTCCTTTTTCCCTCTGGTTGATAATCCTTCATTTTTGATCC
TCTCCTTTTCTATTAAATGCTGTAATTACTGTTTTTCTCTTTGAACTCAG
TCTTACAGCTTCCTTTGGCCCTGTCTCAGCGTTACTCCTAGCATCTGCAC
CCAGGAAAGCCCCTGCCAACGGCTCACAGCTTTCTGCCTTGTCCTCTTGC
CAGGGTTTCTGGACAGGAATGATTTCCAAGCAGCTGACTTACAAAAAGGA
CATTTGTAACACAACCTGTCTTCTTTATTTACACTGTACTTATAATTGCC
TTCAAAGGATGAAAATTAATTTATCATGAGTATTCTTTTAAAAATGTACT
AATAGTTGAGAACAAAATTTCCAGACTGAAAGTGTTTTCAGTAATGATAT
AATTGGAAAAGTTTTGTGTTCTCATATGTTGCTTCTAAAAATAAAAATCA
CCTGTTCACACATGTACTTTCTAGTACATTAAAACATTTATTATTTTATG
TGTATGAACATCCTGCCTTCATGTATGTACATATGTGTATTTATGTGCAT
GCCTGGCACTTTGTAAAAGCCATAAAATGTCTTCTGGATCCCCTGTGTAT
TCGAGTTCCCACAGGCCCTGTTTTCTATCCTCCCCTTTATTCCCTCGCGT
ATTAATACCTCCCCCTATTTTGACATATAAAAATCTTGCTTTCCTCCTCT
TTCATTCCCTATCTTTTTTTTTTG

TTCCTTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCATCTGATTCAGAGCTACCA
AGAGCTGGCTCCCCGAGCCCATCCAGCGATGAGCACAGGCTCCTTTTCCT
AGAGACCTCCGCTAATTGATCTTTCTTCTTTTCCCTTTTTCCTCTTTTTC
TTCTAATCTCTCTCCAGGTATTCCTACCTAACCTTAACTTTTCCTCGGGT
TCAAGACCCTTGGAAAGGCCTGTATACTTATTTTGTGTACCATATTTCCT
CTTTGTTCCTACTCTCTCTCCCCACTTTACTTCTGATAGCTTGTCCTGAA
TTTCCTCTAGAATTTTCAGCCCTATCTTAATCACTTGATAACATGTGAAA
AGGAACAAAAGGGCTCCTAACACCAGAAAAAATTCTAGGCCAAACATATT
CCACTTTACTTCTGATAGATTGCCTTGAATTCCCTTAGAAAGTTCCAGAT
CAGACTTACCTCGTAAAGCTGTACTCACTGGTACCCTCGCTCCCCGTTGA
AAAGTCCTGACACCCTACTGTTTGACCCCCCCTTAAATTGCCTGTTTCAC
CCGTATCCTTTATTATTTGGCCTCCCCCCCCCCCGGCTTTCCGCTTGCCG
TTCACTTTTTCCCCGCCCCCACCCCCCAATTCCCTCTTCCCTTACGGAAC
ATTCGCCCCTCCCCCATTTTTTTTCCCTCTCCCTTTCTTTCTTCTCCCTT
CTTTAT

Query= MSMg01no475_g08.b1 MSMg01no475_g08.b1 CHROMAT_FILE:
MSMg01no475_g08.b1 PHD_FILE: MSMg01no475_g08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:09 2005
         (420 letters)



>mm_chr9_72461569_72462388
          Length = 820

 Score =  735 bits (380), Expect = 0.0
 Identities = 413/430 (96%), Gaps = 10/430 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgataatccttcatttttgatcctctccttttctattaaatgctgtaattactgttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttgataatccttcatttttgatcctctccttttctattaaatgctgtaattactgttttt 410

                                                                       
Query: 61  ctctttgaactcagtcttacagcttcctttggccctgtctcagcgttactcctagcatct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ctctttgaactcagtcttacagcttcctttggccctgtctcagcgttactcctagcatct 350

                                                                       
Query: 121 gcacccaggaaagcccctgccaacggctcacagctttctgccttgtcctcttgccagggt 180
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 gcacccaggaaagcctctgccaacggctcacagctttctgccttgtcctcttgccagggt 290

                                                                       
Query: 181 ttctggacaggaatgatttccaagcagctgacttacaaaaaggacatttgtaacacaacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttctggacaggaatgatttccaagcagctgacttacaaaaaggacatttgtaacacaacc 230

                                                                       
Query: 241 tgtcttctttatttacactgtacttataa----------ttgccttcaaaggatgaaaat 290
           |||||||   ||  |||||||||||||||          |||||||||||||||||||||
Sbjct: 229 tgtcttcaagatggacactgtacttataaaaaaattaatttgccttcaaaggatgaaaat 170

                                                                       
Query: 291 taatttatcatgagtattcttttaaaaatgtactaatagttgagaacaaaatttccagac 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 169 taatttatcatgagtattcttttaaaaatgtactaatagttgagaacaaaatttcaagac 110

                                                                       
Query: 351 tgaaagtgttttcagtaatgatataattggaaaagttttgtgttctcatatgttgcttct 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 tgaaagtgttttcagtaatgatataattggaaaagttttgtgttctcatatgttgcttct 50

                     
Query: 411 aaaaataaaa 420
           ||||||||||
Sbjct: 49  aaaaataaaa 40


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)