BAC Information

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BAC

Clone NameMSMg01-475H01
Chromosome9 (Build37)
Map Location 57,352,384 - 57,352,624
singlet/doubletsinglet
Overlap geneRpp25
Upstream geneLOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948, Ppcdc, Scamp5, D9Wsu149, LOC620603
Downstream geneCox5a, 2310046O06Rik, Mpi1, Scamp2, Ulk3, Cplx3, Lman1l, Csk, Cyp1a2, Cyp1a1, Edc3, Clk3, Arid3b, LOC665235, LOC677423, LOC100039509, Ubl7, Sema7a, Cyp11a1, 4930535E21Rik, Stra6, Islr, Islr2, LOC665268, Pml, Stoml1, Loxl1, Tbc1d21, 6030419C18Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475H01.T7 (MSMg01no475_h01.b1)MSMg01-475H01.TJ (MSMg01no475_h01.g1)
ACCAG557266AG557267
length797794
length of high quality
(start - end)
243 (80 - 322)219 (83 - 301)
definitionCHROMAT_FILE: MSMg01no475_h01.b1 PHD_FILE: MSMg01no475_h01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:13 2005CHROMAT_FILE: MSMg01no475_h01.g1 PHD_FILE: MSMg01no475_h01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAAGC
CGCGGAATTCTCAGGCGTCTCTGAAAACATTCTCAGCCTCTGGCTCAGGC
TGAGACCGCTTAGCGGTGCCTTCTTCAGCAGCAGATTCCCCCAGGCTCCT
CTTGGACGTCGACACCGTAGGAGGGGACGAAGGACCAGGACTGAGGTTCG
GAGGCTGGTAGCCAAGTTGTCGTGGATCCAGTGCGTCCTTTGAAAGTAGG
ATGGCGAGGTTCGGTACATTCTTAAGTACACTGAGACTGGCGGCCGGATC
GCTGGGCGTCTGACCCGGTGCGGTTTTTTTTTGGAGGCTCTGCCACACCT
CGCGTACGCTCCGGTAGTGTAGCCGCGTGACCTGGTGTAAGCCCGCCAGG
CGTTGCTTGACAATCCCGGCGCACGTGATGTTCTTGGCGTTGGCCCCGTT
GCAGCCTTTGACGACCATGGCTTGTCGTGTTGTCTTGCGCTATGCTGGTT
CTGTCCTATTCCCTCCCGTGCTGTTTTTCCTTGTTCGTCTTTCTCTCTCG
TCCCCTTTTTTTCCCTTCCCCCCCCCCCCCCCTCTTTTTCCTCTTTTCCC
TCTCCTTTCTCCCCCCCCTTCCCCCCTTTTTTCCCCCCCTTTTTCTTCCC
CCTCTCTTTTTGTCCTCTTATTCTTTCTTCCCCCCCCTTTTTTTTCCCCC
TACTCCCTCCTCCTCCCTTATTATCCCCCCCTTTTTTCCTCCTCATTTCT
TCCCCTTTTTTTGTCCCCCGATATTTTCTCCTTCTAACCACCCCTTN
CCTCTCTCGATACTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGGCCAGTGTGGTCTAC
ATTGTGATGTAAGACCTGAAAAACCTTATGTCCCGGATGTCCCACTCACA
GAGACACAGAGACAGAGATTGATGCAAAAAGCAAGAGGTTTATTAATCTA
CCATGCTAAGGTCATTCTGAAATCGGGATAGAAGCGACCCTGAGTAGCTA
AAGCACACACCTTTTATACATTTTTGGGGGGGAGGGGGCAGCTTATCATT
GGTTACCCTGTACTGACATGAATGTTTTTACTTACGGACCGGAGACATTG
TGTGGCCCGCCCTATTCGTTCATAGCACTGGCCGTCGCCGCATTAGGTTA
TTGACCCTACCCACTCGTGCCTTCCCCCCCCGCTTTCCCCCACGCTTCCC
TCCTTTGTTCTCCCCCTTGTCCTCTTTCGCTTCTTCCTTCGCTCCCTTCC
CTTTCCCATCTCCCTCCCCCCTCATTCCTTCTTCTTATTCCCCCCCCCCT
TTTTTCTCCCCTTTCTTACCCCCGCTTCTATTCTTCCTTTTCCTCCCCCT
TCTTTTCCCCGCTTATCCCCCCTTTCCTCTTTCCCTCTTCCCTTTCTTTT
TTCCCTTCCCTTTCCCCCCCCTCTTCTCCTGTTCATCTTCTTCTTTTTGC
TTCCCCCTTTCACCCTCTTCTCCCCTTCCTTCTCTCTCTTTTCCCTCTTT
TCCTCTTCCTCTTTCCCTTCTTTCTCCCCTTCCCATTTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_h01.b1 MSMg01no475_h01.b1 CHROMAT_FILE:
MSMg01no475_h01.b1 PHD_FILE: MSMg01no475_h01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:13 2005
         (243 letters)



>mm_chr9_57352184_57352826
          Length = 643

 Score =  458 bits (237), Expect = e-133
 Identities = 240/241 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttctcagcctctggctcaggctgagaccgcttagcggtgccttcttcagcagcagattcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctcagcctctggctcaggctgagaccgcttagcggtgccttcttcagcagcagattcc 382

                                                                       
Query: 61  cccaggctcctcttggacgtcgacaccgtaggaggggacgaaggaccaggactgaggttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cccaggctcctcttggacgtcgacaccgtaggaggggacgaaggaccaggactgaggttc 322

                                                                       
Query: 121 ggaggctggtagccaagttgtcgtggatccagtgcgtcctttgaaagtaggatggcgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaggctggtagccaagttgtcgtggatccagtgcgtcctttgaaagtaggatggcgagg 262

                                                                       
Query: 181 ttcggtacattcttaagtacactgagactggcggccggatcgctgggcgtctgacccggt 240
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcggtacattcttaagtacactgagactggcggccggatcgctgggcgtctgacccggt 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)