BAC Information

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BAC

Clone NameMSMg01-475L06
Chromosome9 (Build37)
Map Location 4,592,807 - 4,593,057
singlet/doubletsinglet
Overlap geneGria4
Upstream geneGucy1a2, LOC100039236, LOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik
Downstream geneEG664889, Casp1, Casp4, Casp12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475L06.T7 (MSMg01no475_l06.b1)MSMg01-475L06.TJ (MSMg01no475_l06.g1)
ACCAG557467AG557468
length718756
length of high quality
(start - end)
253 (45 - 297)372 (79 - 450)
definitionCHROMAT_FILE: MSMg01no475_l06.b1 PHD_FILE: MSMg01no475_l06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:34 2005CHROMAT_FILE: MSMg01no475_l06.g1 PHD_FILE: MSMg01no475_l06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ACTCCTATAGTCAGAGAATCCGCGGAATTCAGGCAACTTACCCAAAAAAG
TGGAAACATCTCTGTACATATTAGTTTCCTTGATGCCTATGAAAAATAAG
GAAGCATATGACAGCGTAGTCTGACACTACTCTAAATCTGCCTGGAATCA
TGCTCGGCCTCTTTCTTCTCATCTGTCACTGAATAGGGCAATTGGTATCT
CTGCATGTCACCTTTCTCATCTGTAAAAACTATCAAGGTCACATGGATGT
TTGACAGTTAATTTTCAAATACTTCATAGCCATGCTCAATGCATATTTNG
TATCTCAATCAACATTTATTCTCATTAATTGCATCCTTATAAGCAAGCAG
GAAACCACAATTCATTACTGGAATTCATTTACTATCACCAATAGTCTCTC
ATACATCTTGCTGGAAAGAATATTTCATATTTGTGCTTTAAATGTAACAT
TTGTGGGAAGCTTTTCATCTCAGGAAAGTATATAGATGAAACCCTCTAGA
GTAAAATTGAAGGGAGACAAATTTTCATGTTGTCTATACTGTATAGTACC
CATAGATCATCCGGCATGGGTTTAAACATTAACCACCTAATAAAATTAGT
ACAAAGTACTATTTCCTGCACACGCCCAATATCTATAGATATTAAGCCAT
TATCTCCTTTGACAATTTATAAAGCCCCGCCCCAATAAAATAATAATATC
TGCCTCGCCTGTTAAAAG
NCCCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACCGAAAGG
CTGAGAAACACCTGAAAAAATGTTCAACATCCTTAATCATCAGAGAAATG
CAAATCAAAACAACCCTGAGATTCCATCTCACACCAGTCATTATGGCTAA
GATCAAAAATTCAGGTGACAGCAGATGCTGCCGAGGATGTGGAGAAAGAG
GAACAGTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGG
AAATCAGTCTGGCGGTTCCTTCGAATATTGGACATAGTACTACCGGAGGA
TCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTA
AGAAGGACACATGCTCCACTATGTTCATAGTAGCCTTATTTATAATAGCC
AGAAGCTGGAAAGAACCCAGATGTCCCCCCAACAGAGGAATGGATACTAA
AACTATGGTACATTTACCCAACGGAGCACTACTCACCTTTTACCAACAAT
GAACTTCCGAATTTCCCTAGGCCATGGTTGGACCCGCAGGGCCGTCATCC
TTACCGAGGGCTACCCTATCCTTTGTGCTCTCCTTCCGCACCGTTTTCCC
TGCCTTTTCGCGCTTGTCTTCTCCTGTATCCCCTACCTTCTTTCCTTTAT
CTCCCCCTCCCCCTTTCTTTTCTCTTTTCGCGCCCCTTTCCCTCCCCTAC
CTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_l06.b1 MSMg01no475_l06.b1 CHROMAT_FILE:
MSMg01no475_l06.b1 PHD_FILE: MSMg01no475_l06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:34 2005
         (253 letters)



>mm_chr9_4592607_4593259
          Length = 653

 Score =  470 bits (243), Expect = e-137
 Identities = 249/251 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaaaagtggaaacatctctgtacatattagtttccttgatgcctatgaaaaataaggaag 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 451 aaaaagtggaaacatctctgtacatattagtctccttgatgcctatgaaaaataaggaag 392

                                                                       
Query: 61  catatgacagcgtagtctgacactactctaaatctgcctggaatcatgctcggcctcttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 catatgacagcgtagtctgacactactctaaatctgcctggaatcatgctcggcctcttt 332

                                                                       
Query: 121 cttctcatctgtcactgaatagggcaattggtatctctgcatgtcacctttctcatctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 cttctcatctgtcactgaatagggcaattggtatctctgcatgtcacctttctcatctgt 272

                                                                       
Query: 181 aaaaactatcaaggtcacatggatgtttgacagttaattttcaaatacttcatagccatg 240
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 aaaaactagcaaggtcacatggatgtttgacagttaattttcaaatacttcatagccatg 212

                      
Query: 241 ctcaatgcata 251
           |||||||||||
Sbjct: 211 ctcaatgcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)