Query= MSMg01no475_m03.b1 MSMg01no475_m03.b1 CHROMAT_FILE:
MSMg01no475_m03.b1 PHD_FILE: MSMg01no475_m03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:38 2005
(323 letters)
>mm_chr9_18930014_18930736
Length = 723
Score = 586 bits (303), Expect = e-172
Identities = 318/323 (98%)
Strand = Plus / Minus
Query: 1 atatttttgtggattctggggatttgaactcttattttcatgtttgctaagcaagtattt 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 596 atatttttgtggattctggggatttgaactcttattttcatgtttgcaaagcaagtattt 537
Query: 61 tatcaagagacattctcatgctcctcacatattctttccaatgtttacattttggtaatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 tatcaagagacattctcatgctcctcacatattctttccaatgtttacattttggtaatt 477
Query: 121 atatgaggttgccttgtatgaacaatatcgaaacccaaatatgaatcaatataaaatttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 atatgaggttgccttgtatgaacaatatcgaaacccaaatatgaatcaatataaaatttt 417
Query: 181 actcatacttctcaaaacattaaaaataagctaaagtatatacatctctattctctaact 240
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 416 actcagacttctcaaaacattaaaaataagctaaagtatatacatctctagtctctaact 357
Query: 241 tatcatgattttttttttaatttatgcaaagtttatttttatataacaattcagtataat 300
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 356 tatcatgattttatttttaatttatgtaaagtttatttttatataacaattcagtataat 297
Query: 301 attcccaatgagaactatatcag 323
|||||||||||||||||||||||
Sbjct: 296 attcccaatgagaactatatcag 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space: 224196
Effective search space used: 224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no475_m03.g1 MSMg01no475_m03.g1 CHROMAT_FILE:
MSMg01no475_m03.g1 PHD_FILE: MSMg01no475_m03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:38 2005
(501 letters)
>mm_chr9_18779301_18780201
Length = 901
Score = 804 bits (416), Expect = 0.0
Identities = 489/542 (90%), Gaps = 46/542 (8%)
Strand = Plus / Plus
Query: 3 caattaagataattttattgtaattagttgataatgtttctgaattaatttaacatcatt 62
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 163 caattaagataattttattgtaattagttgat---gtttctgaattaatttaacatcatt 219
Query: 63 attttgctgtcatttttcctattctcaatatatcttcatatttttctgtctttcaaatta 122
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 attttgatgttatttttcctattctcaatatatcttcatatttttctgtctttcaaatta 279
Query: 123 caagcttcccttctgttaacaagaattatctccttcagaatgtatttgaatagtatctca 182
||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 caaacttccctcctgttaataagaattatctccttcagaatgtatttgaatagtatctca 339
Query: 183 ctccctctatttttttgatatctgatgagctttggttcatatgagtttgattttctaaat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 ctccctctatttttttgatatctgatgagctttggttcatatgagtttgattttctaaat 399
Query: 243 ttaaccatctctggctcgttatttgaacccttaaaagtaattaagttttacacttatttt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 ttaaccatctctggctcgttatttgaacccttaaaagtaattaagttttacacttatttt 459
Query: 303 ttgtttcattttagttgtgactgacaaaaactatgtagttcaagttgatcta-tt----- 356
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 460 ttgtttcattttagttgtgactgacaaaaactatgtagttcaagttgatctacttaatct 519
Query: 357 -------------------------------------taatcttctgttttatgtctctc 379
|||||||||||||||||||||||
Sbjct: 520 tgactgacaaaaactatgtagttcaagttgatctacttaatcttctgttttatgtctctc 579
Query: 380 atcacctgaagtgcttggaatatagatatgcagtgcataaaattaatgcattgccactcc 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 atcacctgaagtgcttggaatatagatatgcagtgcataaaattaatgcattgccactcc 639
Query: 440 attcctttacaaatgatattaatctatactaatgtgtgcatttatgaggtacaatgggat 499
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 640 attcctttacaaatgatgttaatctatactaatgtgtacatttatgaggtacaatgggat 699
Query: 500 ga 501
||
Sbjct: 700 ga 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
