BAC Information

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BAC

Clone NameMSMg01-475N03
Chromosome9 (Build37)
Map Location 31,139,671 - 31,140,110
singlet/doubletsinglet
Overlap genePrdm10
Upstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539
Downstream geneNfrkb, Tmem45b, LOC666558, EG666576, Barx2, LOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-475N03.T7 (MSMg01no475_n03.b1)MSMg01-475N03.TJ (MSMg01no475_n03.g1)
ACCAG557557AG557558
length791735
length of high quality
(start - end)
265 (61 - 325)440 (89 - 528)
definitionCHROMAT_FILE: MSMg01no475_n03.b1 PHD_FILE: MSMg01no475_n03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:43 2005CHROMAT_FILE: MSMg01no475_n03.g1 PHD_FILE: MSMg01no475_n03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:54:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTTCTATATXXXXXXXXXXXXXXXXXXXXXXXXXXAATGCGAGAAGAG
CCGCGGAANTCTACCAGATCCCCAAAAAAGAGCTAATACCAATACTTCTC
AAACTATTCCACAAAATAGAGACAATAAGAACACCACCTAATTCATTCTA
TGAAACCACAGTTACTTTGATACCTAAACCCCACAAAGACCCAACAAATA
TAGAGAACTTCAGACTAGTCTTACTTATGAACATCGATGCAAAAATACCT
AATAAAATTCTCATAAACTGAATGCATGAAACATTAAAACTATCATTCAT
CACGATCAAGTAGGCTTCATCCCAGGTTTGTTTCTATATACAAAAATCCA
TCAATGTAATCCACTATATAAAAAAATTCAAAGGAAAAAAATCACATGAT
CATCTCATTAGATGCTGAAAAAGCCTATGACAAAAATCAACACCATTTCA
TGTTAAAAGTCTTGAAGACACCAGGAATTCAAGGCCCATACCTAAACATA
ATCTAAGAAATATATGAGCTGGCAAGATGGCTCAGCGAGTAAGAGCACCG
ACTGTTCTTCTGACGCCATGAGTCTAAATCCCAGCTATTACTTGGCTGGT
CCACACTGATACCTGCATTTCTCCCTCTTGGTGTGTCCGCATTCAATCTA
CCCGCCTACTCTATACTTCCCCCCCATTTTATACCCCTTTGTCTCTTCAT
CCCTCCATTTTTTCCGAGCCATTCTTCTCTCTTTACCCTTTACCCCTTAT
TTCTCTCCTCGTCATTGTTCTCACAATTTTCACTTCCCCCN
CCCCTCTTTTCCCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCCCTGGATC
CACAAGGTGGCAATAGAGAACCAGCTCCTAAGAGACTTTCTCCTAACCTC
TGTCCACGTATCCCTGCCCTGTGCGGGTGGACATCCACCACCACCACCAC
CACCATAAAGCAGAGACTTTGATTACAGCATTACCTTATAGAGTATGAAT
ATTTCTGAACCAATACAAAAAATGTTCAAGATCTCTCAAAGATAATCTGG
GGAAACCGTTGTGAAAACAGAAAGAACTAGGTTATATTATAACATGGCAA
GGGTATATTTACTGGCTCTTAAGACATAACAGCTATTAAGATGCTCCATT
AAGAATATTTTCAGGTTTTTTAAATTGTAGTTTATTCATAAAATCAATAA
AGTGATTGTTTCATCATCATCAGCCAAGGAGCTACTCTACATTTGATTAG
AGCTCAATTAAAAATTATGCCCCACTGGTGCGTGAGTAACAAGGCATGGT
TGGCCCCAAGCACTTTTCTTTTTTAAAACAGGCGTCCCCTGTGTAAGCCC
TCGTTGACCTTGCAACTTACTAAGCATCTCCGGGTAATCTTTCAAATTCA
TCGGCGTATCTTAACTTACCCTCCCTCCCGGGTGGTGCCTCATGGGCCAT
CCCACCTTTCGTTGGCACCCCTCTGCTTTTTTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no475_n03.g1 MSMg01no475_n03.g1 CHROMAT_FILE:
MSMg01no475_n03.g1 PHD_FILE: MSMg01no475_n03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:43 2005
         (440 letters)



>mm_chr9_31139471_31140310
          Length = 840

 Score =  822 bits (425), Expect = 0.0
 Identities = 437/441 (99%), Gaps = 2/441 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccctggatccacaaggtggcaatagagaaccagctcctaagagactttctcctaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccctggatccacaaggtggcaatagagaaccagctcctaagagactttctcctaacc 260

                                                                       
Query: 61  tctgtccacgtatccctgccctgtgcgggtggacatccaccaccaccaccaccaccataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtccacgtatccctgccctgtgcgggtggacatccaccaccaccaccaccaccataa 320

                                                                       
Query: 121 agcagagactttgattacagcattaccttatagagtatgaatatttctgaaccaatacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcagagactttgattacagcattaccttatagagtatgaatatttctgaaccaatacaa 380

                                                                       
Query: 181 aaaatgttcaagatctctcaaagataatctggggaaaccgttgtgaaaacagaaagaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgttcaagatctctcaaagataatctggggaaaccgttgtgaaaacagaaagaact 440

                                                                       
Query: 241 aggttatattataacatggcaagggtatatttactggctcttaagacataacagctatta 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ag-ttatattataacatggcaagggtatatttactggctcttaagacataacagctatta 499

                                                                       
Query: 301 agatgctccattaagaatattttcaggtttttt-aaattgtagtttattcataaaatcaa 359
           ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 500 agatgctccattaagaatattgtcaggtttttttaaattgtagtttattcataaaatcaa 559

                                                                       
Query: 360 taaagtgattgtttcatcatcatcagccaaggagctactctacatttgattagagctcaa 419
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 560 taaagtgattgtttcatcatcatcatccaaggagctactctacatttgattagagctcaa 619

                                
Query: 420 ttaaaaattatgccccactgg 440
           |||||||||||||||||||||
Sbjct: 620 ttaaaaattatgccccactgg 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)