Query= MSMg01no475_o03.b1 MSMg01no475_o03.b1 CHROMAT_FILE:
MSMg01no475_o03.b1 PHD_FILE: MSMg01no475_o03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:48 2005
(244 letters)
>mm_chr9_46139795_46140437
Length = 643
Score = 449 bits (232), Expect = e-131
Identities = 241/244 (98%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 ctcccagaagacacacacaattccctccattaccagcctgttgctcaccctcattttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctcccagaagacacacacaattccctccattaccagcctgttgctcaccctcattttgtc 260
Query: 61 ttaccctgtagctataacttctggacccccagcatctagagcagttgattttagagcata 120
||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 tta-cctggagctataacttctggatccccagcatctagagcagttgattttagagcata 319
Query: 121 ttgcctgcttctcctgctcttgaccaagagttagtctcctttggtctcatgcttggtctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgcctgcttctcctgctcttgaccaagagttagtctcctttggtctcatgcttggtctt 379
Query: 181 ttttttttatgataatttttttaattaggtattttcctcatttacatttccaatgctatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttttttttatgataatttttttaattaggtattttcctcatttacatttccaatgctatc 439
Query: 241 ccaa 244
||||
Sbjct: 440 ccaa 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 643
Length adjustment: 9
Effective length of query: 235
Effective length of database: 634
Effective search space: 148990
Effective search space used: 148990
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no475_o03.g1 MSMg01no475_o03.g1 CHROMAT_FILE:
MSMg01no475_o03.g1 PHD_FILE: MSMg01no475_o03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:54:48 2005
(478 letters)
>mm_chr9_46332644_46333521
Length = 878
Score = 878 bits (454), Expect = 0.0
Identities = 472/482 (97%), Gaps = 8/482 (1%)
Strand = Plus / Minus
Query: 1 agcactcagaagcaatgtgagtttccttgaagctctttttgtggcactccttggaagacg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agcactcagaagcaatgtgagtttccttgaagctctttttgtggcactccttggaagacg 619
Query: 61 acacatgacagataccttagttctacaaagagacactacctggcaaagactaggggccct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acacatgacagataccttagttctacaaagagacactacctggcaaagactaggggccct 559
Query: 121 ttaggatccccttcaatcccaacgcaccagtacaaaagacactgatgtccactggtggtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ttaggatccccttcaatcccaacgcaccagtacaaaagacactgatgtccactggtggtc 499
Query: 181 ctctgctgtcagctctgaaggggaaagagtcattgttatctaaaaagctcctgcaacatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ctctgctgtcagctctgaaggggaaagagtcattgttatctaaaaagctcctgcaacatg 439
Query: 241 ----ttttctcacccccacccgctatgagtgacatatcctcgggaaagtcatttgcaatg 296
|||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gcaa----ctcacccccatccgctatgagtgacatatcctcgggaaagtcatttgcaatg 383
Query: 297 aggggggaagagagagacaagagggagagtaagcaatcaaattaattctaatgacattga 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aggggggaagagagagacaagagggagagtaagcaatcaaattaattctaatgacattga 323
Query: 357 taaggagatctagaagcccagccaatcgctccattaaactaatgactttgggtcccttct 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 taaggagatctagaagcccagccaatcgctccattaaactaatgactttgggtcccttct 263
Query: 417 gtcatcacctagggtcagtccccctcccttactgtgtctcatgactgctggcaacagcag 476
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 262 gtcatcacctagggtcagtccccctcccttactgtatctcatgactgctggcaacagcag 203
Query: 477 cc 478
||
Sbjct: 202 cc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
